UFO08984.5prime Sequence
1108 bp (1026 high quality bases) assembled on 2011-08-10
> UFO08984.5prime
CAGTCGACATGAACAAGCTACGTCAGATTCACTGCTCGTTGAAAAATGCG
TGTGTCCTGTGCAAACCGCATGTCCTGTCCAGTGCTGGCGTGAGATTCTC
CTGCGGCGATGGCAAGACGATGGCGAAGGGCGTGGTCGTCGGCCTCTATC
AGAAGGAAGGCGACAAGGATCCCAAGCTGACTCCCGCCGGCCACAAGATT
GACCAGCGCGTCCAAGGCAAGCTGATGAAGGCGATCTGTGAAACGAAGTT
GGACGGACGACTGGGTCGCGGCAAGGTGTTCCACAACATCGATACCGAAT
TCGCAGCCGTTGCCGTGGTGGGCGTGGGCCTGGAGGGCATCGGCTTCAAT
GAACTGGAAATGCTGGACGAGGGTATGGAGTTCGTACGTGTGGCCGCCGG
CGTAGGTGCCAGATCCCTGCAGCAGCAGGGTATCACCAACGTCTTGGTGG
ACGGCATGGACTACGCAGAGCAGGCGGCCGAGGGCTCCCAACTGGCCGTC
TGGCGTTTCCCGGACAATCTGTCCAAGAAGAACATGCCGATGGTGCCGAC
CCTGGAGCTATTCGAGTCGCCGGATCACGAGGGCTGGACTCGTGGCATCT
TCAAGGCGGAGGCCCAGAATTTGGCAAGACGCTTAAGCGATGCCCCCGCC
AACTGCATGACGCCTACCATGTTTGCCCAGGCCGCCGTGGACGCTCTGTG
TCCCTGCGGCATTACCGTGGAGGTTCGCACCATGGACTGGATCGAGGCCC
AGCGCCTAAATGCCTTTCTGATGATCGCCAAGGGCAGCTGTGAGCCGCCA
GTGCTCCTGGAGCTGAGCTACTGCGGCACCGCGCCCGATGACAAGCCCAT
TCTGTTCGTGGGCAAGGGCATCACCTTCAACTCTGGTGCCCTCAACCTGC
GCCCTTGCAGAGGCATGGATGAGTATCGGGGCAGCATGTCCGCCGCCGCC
TGCTGTGTGGACATGATGCGCTGCATCGCCGCCTGTCGCTGCCCATCAAT
GTGACGTGCATCATCGTGGTGCGAAAACATGCCTCAGGATGTCGGCGGAA
ACTGGCGATGTGTGTCACCTGCTCTATGCAAGGTCATGCCATTACCTGAT
CTGACAGG
UFO08984.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:54:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap7-RB | 2030 | CG13340-RB | 304..1378 | 9..1078 | 5140 | 98.9 | Plus |
| S-Lap7-RA | 2122 | CG13340-RA | 304..1378 | 9..1078 | 5140 | 98.9 | Plus |
| S-Lap4-RA | 2074 | CG32064-RA | 563..1329 | 270..1033 | 830 | 74.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:54:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13778884..13779942 | 1062..9 | 5020 | 99.2 | Minus |
| 3L | 28110227 | 3L | 10491468..10492169 | 315..1015 | 775 | 74.4 | Plus |
| 3L | 28110227 | 3L | 10466779..10467446 | 255..922 | 610 | 72.8 | Plus |
| 2R | 25286936 | 2R | 13597170..13597760 | 291..881 | 450 | 71.7 | Plus |
| 2R | 25286936 | 2R | 16535791..16536029 | 600..838 | 370 | 77 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:54:06 has no hits.
UFO08984.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:22 Download gff for
UFO08984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13340-RA | 296..1385 | 1..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:14 Download gff for
UFO08984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap7-RA | 296..1385 | 1..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:55 Download gff for
UFO08984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap7-RA | 296..1385 | 1..1085 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:55 Download gff for
UFO08984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13778861..13779946 | 1..1085 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:14 Download gff for
UFO08984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9666366..9667451 | 1..1085 | 98 | | Minus |
