UFO08988.5prime Sequence
1153 bp (1020 high quality bases) assembled on 2011-08-10
> UFO08988.5prime
CAGTCGACATGTTCTCGAGATTAGCCTTACGTCCTTTGACTGTGGCCACA
TCTCGTTCGGCTACCACCCATTCCGCCCAAGGACTAAGTAGGCTCCCTGG
GCATGGAAGTCCCGGAAAGGTTCGCCCGGGTTTCCCGTCCGACAATTGGG
TTAAAGGACCCATGGGCGTCGGCCTGTTGGCATATATCTGTTCCGGAGAC
TGTTGCGCCATTAAGCACGAGCACAGCGGCCTATCCTTGGGCATCATGGA
AGATGGCTACTACAGCAGTGGAATCACCATCGGTATCCTGACCACATTTG
CTGTGATTAGGCTTCTTCCAGCGATTGTAAAGTGGGCTGATAGCGAGATT
ATTAAAATTGAGTCCGAGTACGAAAAGAGTCGTGAAACTAAGATCAAGGT
CCTATCAATCTCGCCCTCGAACGGAAATAAGGATCCTAGCAAGGATAATG
CCGATCAAAACGTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAAGCCATCACAAACGGCATGATGAACCTGAATCGCCA
GCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAA
ACGGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAAATCAAACTGGTGA
ACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTT
TAGGGAAATAGGCCAGGTTTCACCGTACACGCACATCTTGCGAATATATG
TGTAGAACTGCCGAAATCGTCGTGTATTCCCCTCCAGAGCGATGAAACGT
TCAGTTGCCTCATGGAAACGTGTTAACCAAGGTGAAACACTATTCCCATT
ACACAGCTCACGGTCTTTTTCAATGGCAACGAATTTCCGGAGTGAGACCA
TTC
UFO08988.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17300-RA | 699 | CG17300-RA | 124..579 | 9..464 | 2280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:58:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13086744..13087075 | 353..22 | 1660 | 100 | Minus |
| 3L | 28110227 | 3L | 13086507..13086617 | 464..354 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:58:58 has no hits.
UFO08988.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:05 Download gff for
UFO08988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17300-RA | 117..579 | 1..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:23 Download gff for
UFO08988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17300-RA | 117..579 | 1..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:53 Download gff for
UFO08988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17300-RA | 117..579 | 1..464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:53 Download gff for
UFO08988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13086744..13087072 | 25..353 | 100 | <- | Minus |
| 3L | 13086507..13086617 | 354..464 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:23 Download gff for
UFO08988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13079607..13079717 | 354..464 | 100 | <- | Minus |
| arm_3L | 13079844..13080172 | 25..353 | 100 | <- | Minus |
