UFO08990.5prime Sequence
1126 bp (1023 high quality bases) assembled on 2011-08-10
> UFO08990.5prime
CAGTCGACATGGTGAAGGATGAGCCCCTATCGGACGAGTCCGCCGATGTG
ATTGTGCTTGCAGATCGCGAGGAAGATGACATATGCGAGCTGGAGCACTT
GCGTAAGCTCTTCATCGGCGGGCTGGCCCCGTACACCACCGAGGAGAACC
TGAAGTTGTTCTACGGCCAGTGGGGCAAGGTGGTCGATGTTGTGGTGATG
CGCGATGCTGCCACCAAGAGATCTCGCGGCTTCGGCTTCATCACCTACAC
AAAGTCTCTCATGGTCGACAGGGCCCAGGAGAACCGTCCGCACATCATCG
ACGGCAAAACTGTGGAAGCCAAGCGTGCTCTGCCCCGTCCCGAACGCGAA
TCGCGCGAAACCAATATATCCGTGAAGAAGCTGTTCGTAGGCGGTCTTAA
GGATAACCACGATGAGGAATGCCTTCGTGAATACTTCCTCCAATTCGGGA
ATGTAGTCTCCGTTAAATTGCTTACTGACAAAACCACTGGCAAGCGTCGC
GGCTTCGCCTTCGTCGAGTTCGACGACTACGATGCAGTGGATAAGGCTAT
CCTTAAAAAGCAACATGCGATTAAGTACGTTCACGTGGACGTCAAGAAGT
CCATTTATAACCTGGACAAGAAGGAGAAACAGCAGCCAGGTGGGCTGGCC
AACGCCATCAAGCCGTCGCTCAATCAGCAGCAGCAACAGCAGGGTGGCGG
ACAGCAGCCACCTAATGGCAATATGCATGCACCTAGCTTTCGACCACCAG
TGCCGCCACAACAGGCCATGGGCCCCTACCAACAACAGCCACCACCGGCG
CCTATGTCTGCTCCACCACCAAACTTCAACTACTGGGGACCACCTCCGCC
GGCTATGCCGCCCTACTACCAGCAGCCACCGCCGCAGCAGATGAACGGCT
GGGGTCCATATCCGCCGCCACAACAAATGGCTGGAATGCACACCACCGCC
ACCACCGGGTGCCCAGCAGTGCACGCCACCAGTGGGGTTGTCCTCCACAG
TGCAACAGGTGCCGCCGGTGGAGCATGCCACCACCCATGGGTCACAATGA
CACGCGGACGGCTCCAGGTAACTGGAACATGCGCCCCCCAGTGCCGGGTG
GCAGCTTCTCAATTCGAACAGACGAC
UFO08990.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:59:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rb97D-RI | 2828 | CG6354-RI | 131..1241 | 9..1110 | 5180 | 98.4 | Plus |
| Rb97D-RG | 2810 | CG6354-RG | 131..1241 | 9..1110 | 5180 | 98.4 | Plus |
| Rb97D-RF | 2524 | CG6354-RF | 131..1241 | 9..1110 | 5180 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:59:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26874233..26874790 | 1100..553 | 2240 | 96.8 | Minus |
| 3R | 32079331 | 3R | 26874853..26875101 | 556..308 | 1215 | 99.2 | Minus |
| 3R | 32079331 | 3R | 26875174..26875403 | 307..78 | 1150 | 100 | Minus |
| 3R | 32079331 | 3R | 26875543..26875612 | 78..9 | 350 | 100 | Minus |
| 3R | 32079331 | 3R | 28601129..28601184 | 486..541 | 190 | 89.3 | Plus |
Blast to na_te.dros performed 2014-11-26 23:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2774..2893 | 668..793 | 119 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6692..6898 | 633..835 | 115 | 57.5 | Plus |
UFO08990.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:06 Download gff for
UFO08990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rb97D-RB | 127..1244 | 1..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:27 Download gff for
UFO08990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rb97D-RF | 127..1244 | 1..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:56 Download gff for
UFO08990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rb97D-RF | 127..1244 | 1..1113 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:56 Download gff for
UFO08990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26875174..26875403 | 78..307 | 100 | <- | Minus |
| 3R | 26875544..26875616 | 1..77 | 94 | | Minus |
| 3R | 26874221..26874790 | 553..1113 | 96 | <- | Minus |
| 3R | 26874857..26875101 | 308..552 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:27 Download gff for
UFO08990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22699943..22700512 | 553..1113 | 96 | <- | Minus |
| arm_3R | 22700579..22700823 | 308..552 | 99 | <- | Minus |
| arm_3R | 22700896..22701125 | 78..307 | 100 | <- | Minus |
| arm_3R | 22701266..22701338 | 1..77 | 94 | | Minus |
