UFO08991.5prime Sequence
1115 bp (1025 high quality bases) assembled on 2011-08-10
> UFO08991.5prime
CAGTCGACATGGTTCTGGAGAGTACTATGATATGCTTTGATAACAGCGAC
TTCCAGCGCAACGGAGACTACTTTCCAACTCGTCTCATCGTCCAGAGAGA
TGGCATCAATCTGGTCTGCCTGACCAAGCTGCGTTCCAATCCCGAGAACA
ATGTGGGCCTGATGACTCTGTCCAACACCGTTGAAGTGCTGGCCACTCTT
ACTAGCGATGCAGGACGGATTTTCTCAAAGATGCATCTGGTTCAGCCGAA
GGGCGAGATAAACCTCCTGACCGGAATCCGAATTGCCCATCTGGTGCTGA
AGCATCGCCAAGGCAAGAACCACAAAATGCGCATCGTGGTCTTTGTGGGC
TCCCCCATCAATCACGAGGAGGGCGATCTAGTGAAGCAGGCCAAGCGCCT
CAAGAAGGAGAAGGTCAACGTAGACATAGTTAGCTTCGGTGATCATGGCA
ACAACAACGAGATTCTCACAGCATTCATCAACGCGCTTAATGGCAAGGAC
GGCACCGGCTCCCATTTGGTCAGCGTGCCTCGGGGATCAGTTTTGTCGGA
TGCCCTGCTGTCGTCACCCATCATTCAGGGCGAGGACGGCATGGGCGGAG
CTGGCCTGGGCGGCAACGTCTTCGAATTCGGTGTAGATCCCAACGAGGAC
CCCGAACTGGCTCTCGCCTTGCGTGTGTCTATGGAGGAGCAACGGCAGCG
CCAGGAGAGCGAGCAACGTCGCGCCAATCCCGATGGGGCTCCACCGACTG
GCGGAGATGCTGGTGGCGGAGGCGGCGTTTCGGGATCTGGACCTGGAAAC
GAAGAAAGTGCCGGAGCAGAGAACGAAGCCAACACCGAGGAGGCCATGCT
GCAGCGTGCCCTGTCCTGTCCACCGAAACACCCGAGGACAACTTGCCGGA
CTTTGCTAACATGACTGAGAGGAACAGATTGCCTTCGCTATGCAGATGTC
CATGCAGACGCTCCCGACGACTCTTGTTACCAGCAAGCAAGCGCCCAAAG
AACGGACGAGCAAACGCTCCCATGGACGTGGACGAGATTACTCGGAGGTG
ATCGGAGACCGCTTCTTGCAGCGTGCTGGAAATCTGCCTGATTTTGATCC
AGTCGGAGCCGATGC
UFO08991.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:59:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn10-RB | 1356 | CG7619-RB | 48..1167 | 9..1115 | 5140 | 98 | Plus |
| Rpn10-RA | 1422 | CG7619-RA | 114..1233 | 9..1115 | 5140 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21537441..21538330 | 176..1060 | 4030 | 98.7 | Plus |
| 3L | 28110227 | 3L | 21537239..21537380 | 34..175 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:59:13 has no hits.
UFO08991.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:07 Download gff for
UFO08991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pros54-RA | 114..1195 | 9..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:30 Download gff for
UFO08991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn10-RA | 114..1195 | 9..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:57 Download gff for
UFO08991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn10-RA | 114..1195 | 9..1080 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:57 Download gff for
UFO08991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21537113..21537138 | 9..34 | 100 | -> | Plus |
| 3L | 21537240..21537380 | 35..175 | 100 | -> | Plus |
| 3L | 21537441..21538355 | 176..1080 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:30 Download gff for
UFO08991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21530213..21530238 | 9..34 | 100 | -> | Plus |
| arm_3L | 21530340..21530480 | 35..175 | 100 | -> | Plus |
| arm_3L | 21530541..21531455 | 176..1080 | 98 | | Plus |
