UFO08994.5prime Sequence
1103 bp (1014 high quality bases) assembled on 2011-08-10
> UFO08994.5prime
CAGTCGACATGGACCGGAATAACTTGGTCATTGTCGCCACTTCGGGACAA
TTGCACCTTTTCTCGCCGCACTGTGCCATCCATCGGATTTACAGGAACGA
GGAGGCCCTGCTGCGCTACATAATTGATTCCATCTTCCTTTTTGCATTTA
TGCTGGCCCTGATTTTCCACAGCCACCAGACGGAGGCCACTTACCGACTG
GACTTCATCTGGAAGCTGCAAGCCACGGAGGAAAAGGAGGATATGGAGCA
CCTGCAGGCTTATAACCGTAAACTGCTCGAAAACATTCTGCCCGTTCACG
TTGCCGAGCATTTTTTGAGCCGCGAAAAGCACCTCGACGACCTGTACCAC
GAGCAATGCGACTCGGTGTGCATTCTGTTCGCCAGCATACCTAACTTCTC
CGAGTTCTACGTGGAACTGGAGGGCAACAACGAGGGCGTGGAGTGCCTGC
GTCTGCTCAACGAGATTATCGCCGACTTCGACGAGCTGCTCAGCGAGGAG
CGCTTCCGATGCATCGAGAAAATCAAGAGCACGGGCGCCACTTACATGGC
GGCATCCGGACTAACGGCGAACACCTGCGACCGGGTGAACTTCAGTCACG
TGACCGCCATGGCCGACTACGCCCTCCAGCTGTTCGACAAGATCGAGGAG
GTCAATATGCACTCCTTCAACAACTTTCGCATGCGAATAGGGATAAATAT
TGGTCCTGTGGTGGCTGGCGTTATTGGCGCCTGCAAGCCCCAATATGACA
TTTGGGGTAACGCCGTCAATGTGGCTTCGCGAATGGACTCCACAGGCTTG
GTGGATCACATCCAGTGGCAAACGACGCCGAGACAGCGATCGTTGAGGGA
ACTCGGATGCTGTGGCTTTTGGGGCGACTTCTTTGATAAGCAGCATGTGA
AGGACTCGTTGGCGGTGTGGTGAAGCCGCGAAAGGGTCATCGTCGCAGCT
TTCTCATATCCTTCTGGTCAGCATGGCACTGTACACTTTCAGCGTGACGA
GGGGCAGTATCTCTAATGTACACCTGGCAATTTGACTGGATGTGGATGGC
GTACAGCACTCAAGACCTCCAGTCATCGCCTACTGAATGCAATGCTTATG
GCT
UFO08994.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:58:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43373-RB | 5913 | CG42513-RB | 4173..5279 | 9..1103 | 5025 | 97.7 | Plus |
| CG43373-RC | 6246 | CG43373-RC | 4030..4750 | 95..815 | 3575 | 99.7 | Plus |
| CG42514-RC | 2087 | CG42514-RC | 1152..1453 | 814..1103 | 1030 | 92.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:58:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16507334..16507553 | 228..9 | 1100 | 100 | Minus |
| 3L | 28110227 | 3L | 16504759..16504942 | 691..508 | 920 | 100 | Minus |
| 3L | 28110227 | 3L | 16492798..16493003 | 1015..813 | 865 | 98.1 | Minus |
| 3L | 28110227 | 3L | 16505061..16505230 | 508..339 | 850 | 100 | Minus |
| 3L | 28110227 | 3L | 16504322..16504448 | 815..689 | 635 | 100 | Minus |
| 3L | 28110227 | 3L | 16506376..16506491 | 339..224 | 535 | 97.4 | Minus |
| X | 23542271 | X | 14794638..14794782 | 528..384 | 275 | 79.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:58:40 has no hits.
UFO08994.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:02 Download gff for
UFO08994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42513-RB | 3421..4464 | 9..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:14 Download gff for
UFO08994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43373-RB | 4021..5064 | 9..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:44 Download gff for
UFO08994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43373-RB | 4173..5216 | 9..1044 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:44 Download gff for
UFO08994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16506377..16506486 | 229..338 | 98 | <- | Minus |
| 3L | 16507334..16507553 | 9..228 | 100 | | Minus |
| 3L | 16492764..16493000 | 816..1044 | 96 | <- | Minus |
| 3L | 16504322..16504446 | 691..815 | 100 | <- | Minus |
| 3L | 16504760..16504941 | 509..690 | 100 | <- | Minus |
| 3L | 16505061..16505230 | 339..508 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:14 Download gff for
UFO08994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16499477..16499586 | 229..338 | 98 | <- | Minus |
| arm_3L | 16485864..16486100 | 816..1044 | 96 | <- | Minus |
| arm_3L | 16497422..16497546 | 691..815 | 100 | <- | Minus |
| arm_3L | 16497860..16498041 | 509..690 | 100 | <- | Minus |
| arm_3L | 16498161..16498330 | 339..508 | 100 | <- | Minus |
| arm_3L | 16500434..16500653 | 9..228 | 100 | | Minus |
