UFO09001.5prime Sequence
1129 bp (1045 high quality bases) assembled on 2011-08-10
> UFO09001.5prime
CAGTCGACATGACTACTTTGGAGGAGCCTGTCCAGGCGGCGGACACGGTC
GATCCGTGTCCTCCGGGGATTCCCAATCTGAAAACCGTTCTCAGCGACGA
TGCCTCGAACTCATCGGTGCTGGAGGACATCGATGTGAGCAATACGAGCA
GCAGTAGCTCCAGTTCTAGCAGCTCTAGCTCCAGCTCTGGTTCCTGCTCG
GGATCGGGCACCGATACGGACACCGGCAAGGGTAGCAGCAATGTCGGCAG
TCTGGATGTGACTAGCTCATCGAGCATTGGTTCAGAGACTTCCATCTCAT
CGACGGGCTCCACAGCCATTGCAGGACCATCCACTTTGCTAGACGATTCG
AACTCATCCGGACTGGGCCTGGTGGTGGATGTGGATAGCAACGGGAGCAG
CCAGGAGCTGAGCAGCCACGGCGTCACCGAGCTGGACTCGCTGGAGGACT
CGTGCAGCGGCCTAATGATCAAGGATGGGGATAAGCTATGCAAGCTGTGC
AGCTTACGCCTCGTGATGCCGCGCATCTTGTCTTGCCTCCACGTATTCTG
TGAGGACTGCCTGCAGGCAGTGGTATCGAAGGACACGATGTCGGCCAGCT
CGCCCAACAGCTGCTCCTCGTCGTCGTTCGATGGCAGCGAGCACCAGAAC
CGTTTGTCCGCTGTGTTCATCGAATGCCCCGTGTGCAAGCAGGAGACACC
GCTGGGACCCAAGGGTATCAAGGCACTACCCTGCGACTATATCGTGACCA
ATATACTGGACCTCTCCAATTTGGAGTCCGAGCACATTGTGTGCACATCG
TGCAAGAGCAAAGAGGAGGCCATTTCGCGTTGCAACGACTGCGCCAACTT
TCTTTGCAATGGCTGCGATAACGCCCATAAGTATATGCGTTGCTTCGAAA
ATCACCATGTTGTGCGCATCGAGGATCTGACCAGAACGTCCACGACAGCT
GATCATCCATAAGCCAGTGTTCTGCCCACAGCACGTAAGCGAGAATCTCA
AGTACTATTGCTTCACCTGCAGGTGCCCACGTGCCATGAATGCCTGCTGA
CCGATCCAAGGCAGCGATCATATTTATGAGACGCAGGTGGCGGAACAGGC
GTTCGAGCCGATTCAGGAACCTTGAGTAT
UFO09001.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:49:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mei-P26-RD | 8899 | CG12218-RD | 955..2067 | 9..1112 | 5260 | 98.7 | Plus |
| mei-P26-RC | 23041 | CG12218-RC | 927..2039 | 9..1112 | 5260 | 98.7 | Plus |
| mei-P26-RB | 22580 | CG12218-RB | 517..1629 | 9..1112 | 5260 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9167155..9167743 | 500..1083 | 2625 | 98 | Plus |
| X | 23542271 | X | 9166539..9167032 | 9..502 | 2470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:49:09 has no hits.
UFO09001.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:39 Download gff for
UFO09001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-P26-RA | 815..1952 | 1..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:56:56 Download gff for
UFO09001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-P26-RB | 510..1647 | 1..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:56 Download gff for
UFO09001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-P26-RB | 510..1647 | 1..1127 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:56 Download gff for
UFO09001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9166532..9167032 | 1..502 | 99 | -> | Plus |
| X | 9167158..9167794 | 503..1127 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:56:56 Download gff for
UFO09001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9060565..9061065 | 1..502 | 99 | -> | Plus |
| arm_X | 9061191..9061827 | 503..1127 | 96 | | Plus |
