UFO09006.5prime Sequence
1135 bp (1040 high quality bases) assembled on 2011-08-10
> UFO09006.5prime
CAGTCGACATGGCCAGCAGCAAGGAGTTATGCTCCATCCGGGAATGGGCA
CCGCTCACGGAGGTCATCGAGCGGATTCCGGCGCGCCTGCAGCGCGGTTT
CTTTCCGGCGAATCTCAACCTGACCTGTGTGGACGCCACCGAGGAGTTCC
TAGCCATGGGCAGCGACGCGGGCATCGTCTTCTGGTATAATCGCCACACG
GGCGAGATGCAGAAGCTGAAGGCTGAGGTGGCCACTCGGATTACGTGCGT
GCGGGTTGTCAACTCCGTCGAGTACATGGTTGCGGCTGGGTGCGCCAACG
GGCAGGTGAGCATCTTCCAGATACAGAAGGAGCTGCCACGGGACCTTGAT
TTGGTGGCTCCTTGCACCAAGAGTCGGCCCATTGAGCGGTATACTATCCG
GGATCTGCACAAGTGCGTGGTCAGCTGCTGTGAGTGGTCCAAGAACGGGA
TGAAGCTCTATTCCGGCGATCGCCAGGGAGTGGTGGTGCTCACGGAGCTC
GATTACCAGGCGCACCTCAGCAAATCGGTGGAGATCCTGAGCGAAGCATA
CGAGATCGTACAGCTTAGCGTTCGGCAGAGCTACCTACTGGTGGCCACCC
TCTACCGTTGCATCGTATGCCAGATGGACGCTCAAACCTCGCAGTGGAAC
ATCACCCAGGTGGGAAAGAAGGATCGCAAACAGCTCATCGACTGCGGGGC
CATATTTCTGAAGAAACAGGAAGCAAACAAGCCGCAACTTGTCTGCGGAC
GTCCTGGCCTGCGCTTCTGGGTGGCAGACGCTGCGGGAAATGTGTCCAAA
ACAGTGATATTCCGAGATGCCGTTCTGCGCAGTCCCACCTGGGAATACCT
ATTCTGAACCCCAAGCAGCGCAGTGAGCCGTCCGGTACCCACCACACGTC
TGCGTCTACATCTTCGACTAGACATTCTGGACTGGCAGATGGCGATGTGG
GCTACGTGGCCAGCAGCACTTTCGGCACTATATCTCTACGATGGCCACGA
CTCACTACTGTAACACACGACGATGCACTCTGTACGTACTTAACCTTGGA
TCGACTCAAGTTAAAGCCGCTTGCGCGAGAATTGGCGGAAGAATCTGAAT
TCGCGATCTGTGTAAGATCTCCTGTGGAGGCAATT
UFO09006.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11141-RC | 3243 | CG11141-RC | 134..1222 | 7..1092 | 5190 | 98.9 | Plus |
| CG11141-RA | 2497 | CG11141-RA | 134..1222 | 7..1092 | 5190 | 98.9 | Plus |
| CG11141-RB | 2753 | CG11141-RB | 390..1478 | 7..1092 | 5190 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7461768..7462344 | 1084..512 | 2470 | 97.6 | Minus |
| 2R | 25286936 | 2R | 7462412..7462698 | 512..226 | 1435 | 100 | Minus |
| 2R | 25286936 | 2R | 7462784..7463006 | 229..7 | 1115 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:49:23 has no hits.
UFO09006.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:41 Download gff for
UFO09006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11141-RA | 370..1459 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:58:21 Download gff for
UFO09006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11141-RB | 382..1471 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:01 Download gff for
UFO09006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11141-RB | 382..1471 | 1..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:01 Download gff for
UFO09006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7461768..7462343 | 513..1084 | 98 | <- | Minus |
| 2R | 7462412..7462696 | 228..512 | 100 | <- | Minus |
| 2R | 7462786..7463009 | 1..227 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:58:21 Download gff for
UFO09006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3349273..3349848 | 513..1084 | 98 | <- | Minus |
| arm_2R | 3349917..3350201 | 228..512 | 100 | <- | Minus |
| arm_2R | 3350291..3350514 | 1..227 | 98 | | Minus |
