UFO09007.5prime Sequence
1109 bp (1018 high quality bases) assembled on 2011-08-10
> UFO09007.5prime
CAGTCGACATGGCGACTGTGGCGGAGGGCAGCAAAATGCTCGAGGCAGCA
TTACAGCAAATGGACGGCCTTATATCGAGTACCGCGACACAGGCGGGATC
CGTTTCTATATCCGGAGCAGGGTCTTCCCTGACACTCAGCGAACGCAACT
TAATTTCGGCCACTAATGTTTTGTCAACAGCTAAGACTTTGGCTCTCGCC
CTGCAACAGGTCGGACTGGCTGCTCCAGCACCGGATCCTGTCACGGCGGC
CATTATCAGCGACTGGCTGGAGACGCACATACCTCGTCAGGATTCCGACG
AGCGTATGCGTCGCCTGCAACGGGATAAGGAGGGCTTAGCCCTGCAGTAT
CAGATGCTGGCGGAACGAGTGTCAGAACAAGCGGACAAGATTATCGAGCT
GGAGGGTCTGATAACGGAAAAGAGCCAGCAGTTGTGTACCAAGGAAGAGC
AACTGCAACGACAGATGATTTCTAGTTCCGCCCTCGAGACGCAAAAGCTG
GAGCTAATGAGTGCCTTAAGTGAACTAAAACTGCACCGTACTGCATTAGA
GCAGGCTAACGATGGAGGTAGCGCCATTTCCGCCAATATTCCTTACGGCA
GTTTGAGCAACATTAATCAGAAGGCCTTTATGGGATCGCCCAAGACACCG
CCCTCTGCACTGCGGCACCAAATCAAACCGCAGTTCCACAGCCTGCCAAG
ATCGCATGGCAAGTTTGTGAACAACAATAACAATCGTGCCTTAGACGTCA
ATGCCAACAGCAGCGGCAAGCAGCGAAACGTGGCCTTTGCTTCGAACGAA
CACATTTTGATTGATGACAATCATCATCAAGCGGAGGATGCAATGACTTC
CAGCTTTATGTCGCAGTTTACACCCTCACCAAAGCTGAGGGAAAGATCTG
CCCGTGCTTGCGCAACATACTTGGTAAGCTACGACGCAGCAACAGCAGCA
ACTGCGAGCTGACCGCCTTGAGCAGCAGAGCCCGAGTTTCGACGAGAGAG
CCCGAGCTACGGCAGCGTCGATGATGAGTGCTCAAACTCCGTTGTCGTGA
AATGAAAACATGACCAACCTGGGAGCCAGAGGTGGGCAATGGTTGCCTAC
ATGCTTAAG
UFO09007.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:49:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Liprin-beta-RC | 2723 | CG10743-RC | 164..1280 | 8..1103 | 4995 | 97.7 | Plus |
| Liprin-beta-RA | 2787 | CG10743-RA | 228..1344 | 8..1103 | 4995 | 97.7 | Plus |
| Liprin-beta-RB | 2813 | CG10743-RB | 254..1370 | 8..1103 | 4995 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:49:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13513856..13514668 | 208..1015 | 3835 | 99.3 | Plus |
| 3L | 28110227 | 3L | 13513591..13513794 | 8..211 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:49:28 has no hits.
UFO09007.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:42 Download gff for
UFO09007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10743-RA | 233..1301 | 8..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:58:49 Download gff for
UFO09007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Liprin-beta-RB | 254..1322 | 8..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:02 Download gff for
UFO09007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Liprin-beta-RB | 254..1322 | 8..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:02 Download gff for
UFO09007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13513591..13513792 | 8..209 | 100 | -> | Plus |
| 3L | 13513858..13514724 | 210..1061 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:58:49 Download gff for
UFO09007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13506691..13506892 | 8..209 | 100 | -> | Plus |
| arm_3L | 13506958..13507824 | 210..1061 | 98 | | Plus |
