UFO09009.5prime Sequence
1147 bp (1020 high quality bases) assembled on 2011-08-10
> UFO09009.5prime
CAGTCGACATGGCCAACCAACTGGACGCCAGTGTGAAGGACGACCTGAAG
ACGCAGTTCGTCACCCGCGAGGGCACCTACCGCCTGCTGACCCTCTCGGA
ATACTCGCGGCCCAACCGGGTGGGCTACAGCAGCAACCAGAGCTCGCCGC
AGGTGCGCGTCTCCATGGTGACCCTGCCCAGTCCGGCGCAGGGCAAGCTC
GGCTCGGATGTGGGCGTGGGCACACCTGTGGGCGGCGGAACAGCAGGAGC
CAACACCACCACAACGAATGGCAGCTCGCCGGGAGCGTCGCCTACGGGAG
CAGCCGGAGCCAGCACAGCAATATCGAATGGAGGCGCTGGCGGTGACTAT
AGCCACAGCAACCACAACAGCAACAGTGCCGGAAACAACACTGTGGAGGC
GCGTCTGGGCGGCGGCATATCCATGCACTCCATGATGAACGGCGGCGTCG
TCGACCAGAATGGCGTGGCCACCAATCAGGTCCTAGGAGGCGATCGCATA
TGCTTCAACTTCGGACGAGATCTCTACGTTTACTCCTTTCGCGGAGCCAA
GAAGGGCACGGAGATGAGCAAGCCGATCGATAAGAAGTTCTACAAGGGCA
CCAATCCCAGCTGCCACGACTTCAACATAAGCTCGGCCACGCCCACGGGA
GCGCCCCTTCTGGTGGGCTTCACCACAGGTCATATCCAGCTGGTCTCCCC
GCACGTTGGTCCTCGGGAAGTGAGGAAGCTCTTCAACGAGGAGCGACTGA
TCGACAAGACCAAAGTGACCTGCCTAAAGTGGCTACCCAACTCACCGCAC
CTGTTCCTCGCCGCCCACGCCTCATGTCACCTGTACCTGTACAACGAGGA
ACTACCCTGCGCCGCCACAGCGCCCAGCTATCAGCCCTTCAAGCTTGGCG
ACGGCTACACGATACTCACCAGCAAGTCCAAGACCACAAGGACCCGCTCT
TCAGTGGGTCTTCAGCACCGACAACTGCTGCGTCAATGAGTTCTGCTTCT
CGCCTTGCGGATCTCACTTGGCCGTTGTTTCCAGGACGTTCCTGCCCGTC
TTCACTACGACACCATGAGCTGCTTCGATCGCACGCCTCTACTTGGCGGC
TTCCCTCTGCGTGCCTGTCCTGACGCAAGTACATTGGTCTGTGGGTG
UFO09009.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:49:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6420-RB | 4175 | CG6420-RB | 505..1654 | 9..1147 | 5210 | 97.7 | Plus |
| CG6420-RA | 3698 | CG6420-RA | 505..1654 | 9..1147 | 5210 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:49:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26724166..26724712 | 555..9 | 2735 | 100 | Minus |
| 3R | 32079331 | 3R | 26722524..26722855 | 1067..742 | 1335 | 97 | Minus |
| 3R | 32079331 | 3R | 26722926..26723116 | 743..553 | 940 | 99.5 | Minus |
Blast to na_te.dros performed 2014-11-26 23:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2303..2410 | 288..390 | 140 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2422 | 280..390 | 137 | 59.3 | Plus |
| G5 | 4856 | G5 G5_DM 4856bp | 550..609 | 60..1 | 129 | 68.3 | Minus |
UFO09009.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:43 Download gff for
UFO09009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6420-RA | 499..1653 | 1..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:59:49 Download gff for
UFO09009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6420-RA | 500..1654 | 1..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:05 Download gff for
UFO09009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6420-RA | 500..1654 | 1..1147 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:05 Download gff for
UFO09009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26722439..26722853 | 744..1147 | 93 | <- | Minus |
| 3R | 26722926..26723114 | 555..743 | 99 | <- | Minus |
| 3R | 26724167..26724717 | 1..554 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:59:49 Download gff for
UFO09009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22548161..22548575 | 744..1147 | 93 | <- | Minus |
| arm_3R | 22548648..22548836 | 555..743 | 99 | <- | Minus |
| arm_3R | 22549889..22550439 | 1..554 | 99 | | Minus |
