UFO09012.5prime Sequence
1115 bp (1034 high quality bases) assembled on 2011-08-10
> UFO09012.5prime
CAGTCGACATGATGCTCACATCCATAAACAACTCCTTTGAGCAGGACACC
CACGATGCGGACGCCAACTGCGACGGGCCCGACCTGGACTTCGTGTACGC
GGACGTGGATGGCTATCAGAACGAGATCGCTGAACTGTATAGCTACACGG
AGTTCAGCGAGTTTCAGATGAACGTGAAGGCCTTCGAGGACCAGATGGAG
CTGTACGACCTGCCGCCCAACTGGCAGAAGCAGGACTCCGCCTCCCAGCG
CGGCATCGTGATGAAGCTGGTGGACCAGCTGGAGGTCTCCGATCGATCCT
TTCGCATGCAGGCCGCCCGGTGCATCCTTTACCTGGCCCAAGGCTGCTGG
GCGGAGGTTCAGTCGGACGAGGAGCAGCACCAGATCACCAGGGACAATGT
GCTGGTGCTCTACCAACTCGGCGTCTTCGCCTCCTTCATCGACCTGCTCA
ACATGGAGATCGAAAGCGCCTGCTCTCCGGACATTGTGGCCGTCAAGATC
ACTAACGTCACGCTTGTGGACTCCACGGACATTCGGGTGATCCTATCTGT
GCTCTACATCATCACAGAAACGATTCGCGATGAAAAGGAAAAGGGCAGCG
AAGACTACAGAGAGCTGGCCGACTCCTTTGTGCAAGAAATCAACTCACCA
CTACCAGATGGCGAACTTCTGGCCGTCAAGCTGTTGGGCATGATCACACG
GTTTTGCAGTGGCGCAGCACCGCAGTTCCCCATGAAGAAGGTTGTCCTCC
TGCTGTGGAAAGTTTCGCTGCTGGGACTGGGAGGCATGGATGTGCTCAAG
AATCTCAAGAACGAGTATCGATTGAAGGTGGGTTTGGAACCCATCACCGA
GGACACGCTGGAGGTTACCAAGTGCATGCGAGCCAGCTCACCGCCGGCCA
CAGCTACTGATATACTGGAGAACCAGTATCCCAAGCGGAACTTCAAACGC
TCCCTGATGAAGCAGCGTTTTTGGACGAGCCCGAGCAGAATAGAACATGG
AGATGGGCGGCACGAGGGTCAAAATAATGCCATCATGGGCAGCGGCATGG
CGAACCGGGGAGGAGGAACTCTTCTCAGTACTACGACTACGAATGATCCC
CTCTCGTCGAATCCA
UFO09012.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Strip-RC | 3792 | CG11526-RC | 310..1413 | 9..1109 | 5155 | 98.4 | Plus |
| Strip-RA | 3596 | CG11526-RA | 573..1676 | 9..1109 | 5155 | 98.4 | Plus |
| Strip-RB | 3161 | CG11526-RB | 173..1241 | 44..1109 | 4980 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:49:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3324700..3325637 | 946..9 | 4690 | 100 | Minus |
| 3L | 28110227 | 3L | 3324498..3324636 | 1084..947 | 285 | 91.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:49:05 has no hits.
UFO09012.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:39 Download gff for
UFO09012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11526-RA | 569..1670 | 1..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:56:28 Download gff for
UFO09012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11526-RA | 569..1670 | 1..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:55 Download gff for
UFO09012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Strip-RA | 569..1670 | 1..1104 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:55 Download gff for
UFO09012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3324700..3325641 | 1..946 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:56:28 Download gff for
UFO09012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3324700..3325641 | 1..946 | 99 | | Minus |
