UFO09013.5prime Sequence
1126 bp (1032 high quality bases) assembled on 2011-08-10
> UFO09013.5prime
CAGTCGACATGGACGAAGCCAACAAGGAGGATGTGAAGCGAGCCTCTCTT
TCCAACAGCACGGTGACGATAAGGCCGCGCCTGATCTACGGACTGCGGTC
GGATGTCATTGGCAACATCCACTTCAACCTGACCAAGGAGGTCATCTATC
CGGTGGAGGGAGTTCTAGCGTTCCACGACTACGTCCAAAACAAGCAAAGG
TTTCTCAGGCTGCCGGAGGATACGCGACCCGAGGTGATATCCATAAGTTC
GCATCGCAAACTACTGGCGGTGGTGGAAAGGCACTCGAAAAATGGTCGGT
ATATATCCATTTATGAGTTGGCCACCCTGAAGAAGCGACGTCACTTGGAG
CTGCCGAGCAACCATCGCAATGCGGAGATACAGCAGATGATCTTTACCAA
TGACTCCAGATCGGTGGCCCTGATCACCCGCCCGCCGGAGGAAACCCTTA
TTATGTTGGTGCTGGACAAGACAAGCACAGTGATCGAGGGCAGGGCCACA
ATCCCGGGATCTCATGGAGGCGCCGAGTGCATCGCTGGCAATCCAAACGA
TTGCAATTTTATGGCGGTCGGAGGCGAGCGCACGTTGTTGCTGATGAGTA
AATCGGAGCGAGGGTTTAGTATCAGCAATAATCTGAAGGTGAAATATAGG
GTCACCTCGATGGCTTTTCTATCGCTGGACCTGCTGATGATTGGTACATC
GGATGATCAGTTGATCCTGGTGGAGAACGGCGAGCAGAAGTTGGCTCAAA
AGGCGAGCGATGCGGACACTGTGGACTTGATGATCGATCAGGAGGTGTTC
GATCGGGACAAGGAGTTGCAGGAACAGCGTTTCCTGCCCACGCAGGCGGT
TAGCCTTCCTGACAGGAGAGTCCTCTGCATGACCGCCTTCCCCAAGGGAT
TCGCCTACATCATCTTCAATCGGGCCTTCGTCTTCGAGCGCGTTTCCAAG
TCAAGTTCGAGAGAAAACCATCTTACGTGCCCACGAATCTGATGCCGAGC
ATATGTACCAGATCTAAATCTGCCATCGACCACAAACAGAAACCGTGATG
TGAACCCATTCCATGTCAGATTATGTGGATTCATTGTCCGGAACCTTGAA
CCAGCACTGAGTTGACCGCGTGGATC
UFO09013.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:49:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4329-RA | 3781 | CG4329-RA | 157..1237 | 9..1078 | 4935 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22612037..22612790 | 1039..293 | 3360 | 98.5 | Minus |
| 2R | 25286936 | 2R | 22613020..22613220 | 209..9 | 930 | 97.5 | Minus |
| 2R | 25286936 | 2R | 22612879..22612965 | 292..206 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:49:55 has no hits.
UFO09013.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:46 Download gff for
UFO09013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4329-RA | 108..1175 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:13 Download gff for
UFO09013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4329-RA | 149..1216 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:13 Download gff for
UFO09013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4329-RA | 149..1216 | 1..1059 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:13 Download gff for
UFO09013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22612015..22612790 | 293..1059 | 97 | <- | Minus |
| 2R | 22612879..22612962 | 209..292 | 100 | <- | Minus |
| 2R | 22613021..22613228 | 1..208 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:13 Download gff for
UFO09013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18499520..18500295 | 293..1059 | 97 | <- | Minus |
| arm_2R | 18500384..18500467 | 209..292 | 100 | <- | Minus |
| arm_2R | 18500526..18500733 | 1..208 | 95 | | Minus |
