UFO09014.5prime Sequence
1105 bp (983 high quality bases) assembled on 2011-08-10
> UFO09014.5prime
CAGTCGACATGGCGGTCAAGGTGCAATTCGAAATTGGCCACACGTCGAAG
CTGCGCAGCAAGAAGACACCGCATCCGCAGGCCTTTACGCACGACTGGGA
GATCTACGTTCAGGGCGTGAACAAGGCGGACATCAGTGCTTTTGTGGAGA
AGGTGGTCTTTGTGCTGCACGAATCCTTTCCGAAACCCAAACGAGTGGTC
AAGGAACCGCCGTATGCCATTCAGGAGTCCGGCTACGCTGGCTTCCTACT
GCCTGTTGAGATTTACTTTCGCAACCGAGACGAACCCAAGCGCATTGTTT
ACCAGTACGACCTGGTACTGCAGTCCACGGGTCCACCGCAGCACCACGTC
GAGGTAAAGACGCACATTTTCGAGGCGCCGTCGGAGGAGTTTCGCACGAA
ACTTATGCGAGGCGGTGGAGTGCCAGTGTTCGGAGCTAACATCGGTGCCG
GCAGTCTCGCCCGAACGCTTTCGCCCAGTGTTGGCAGCGGTGAGACAGCG
CACAGTAATGAGATGTCTGGTGTCAAAGCCAAAGGCGTACCAGGTACAAT
ATCCATGAACTCGGATTTAAACACCGGCAAGAAACACAAGTCGCGCAGCG
AGGATCCCGGAAAGAGCAATGCCTTCTCTGCCCTCTTCGGTCCGCCTATC
ACGAAGACCAGCGTAACGGCCAACAACATGGCCCAGGTGCCTGTCTCCAA
GCACTCTCCGGAGGCTAAAAGTGCTGCCGTTGGCGGAAAGGGTGTGTTTC
ACGAGGGCAGGGAGAAAGGCGAGCAAGGATCGCGATAAGTCCAGCGGCGG
AGACAAGCCGCGGGAGAAGGACAAAAAGATCGGCATGGTCGCGACAAAGA
CCGAAAGTCCAGTAAGTCCGGCGATGGCAGCACGACGGGATAAGGAAAAG
TCTAAGAGGATAATCACGGGACAGGAGCGGGGAGCGCGAGCAAGGTTCAG
GCATACACATCTGCACGCCCTTACGGTGGCTACTCTGTGGCACAGCTGGA
GGACTGGTTAAGCCCACAGCAGTCTAGCTGGAAGCAACGGAATGGGTGGG
CCCAGTCCAGAGAACGCAATGATCAGCCGCTGTCCGTGCACCTACTTCCG
TCCAG
UFO09014.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:50:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ear-RC | 3988 | CG4913-RC | 197..1313 | 8..1099 | 4795 | 96.8 | Plus |
| ear-RB | 3091 | CG4913-RB | 197..1313 | 8..1099 | 4795 | 96.8 | Plus |
| ear-RA | 3091 | CG4913-RA | 197..1313 | 8..1099 | 4795 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:49:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15321674..15322511 | 194..1021 | 3530 | 97.5 | Plus |
| 3R | 32079331 | 3R | 15321417..15321604 | 8..195 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:49:59 has no hits.
UFO09014.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:46 Download gff for
UFO09014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ear-RA | 187..1214 | 1..1021 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:16 Download gff for
UFO09014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ear-RA | 193..1220 | 1..1021 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:14 Download gff for
UFO09014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ear-RA | 193..1220 | 1..1021 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:14 Download gff for
UFO09014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15321413..15321604 | 1..195 | 98 | -> | Plus |
| 3R | 15321676..15322551 | 196..1054 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:16 Download gff for
UFO09014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11147135..11147326 | 1..195 | 98 | -> | Plus |
| arm_3R | 11147398..11148273 | 196..1054 | 97 | -> | Plus |
