UFO09015.5prime Sequence
1087 bp (1009 high quality bases) assembled on 2011-08-10
> UFO09015.5prime
CAGTCGACATGACGGTGGATTTCAACGATTATTTTTGGGGGGAGAAGAAC
AATGGCTACGATGTTCTGTACCACAACATGAAGTTCGGCCTGATTGCCAG
CAAGGAGTTATCCGAGTTTCTGCGCGAGAAGTCTAACATTGAGGAGCAGA
ACTCAAAGATGATGTCCAAGCTGGCCCACAAGGCTGGTACACTAAATAGC
ACATTCGCTCCTGTTTGGACCATACTGCGAACATCGGCAGAGAAGCTCTC
CACGCTCCACCTGCAGATGGTGCAAAAGCTGACTGAGCTGGTCAAGGATG
TTGCCAAGTATGCCGACGAGCTGCACAAAAAGCACAAATCCGTCAAGGAG
GAGGAATCGCAGACTCTTGAGTGTGTCCAAGCCATCCAGACGTCGACGGT
GGCAGTGCAAAAGTTGCGCGATCTGTACGCCAGCAAGGTCCAGGAGCTGG
AGAAGCTGCGCAAGGACAACGGCTCGCACAAGGATGCCGAGAAGCTAGAG
AGCAAGCTGAAAAAACTGCAGGAGGAGTACAAGGCTTTGTTGGACAAGCA
TAACCCCATTAAGAACGAATTTGAGAGACGCATGACACAGACCTGCAAGC
GCTTTCAAGAGATTGAGGAGGTGCACCTTCGTCAAATGAAGGAGTTTCTG
TCCACGTATCTAGAAATGCTGCAAAACAATCACGATATGGTGGGTCAAGT
ACATTCCGACTTTAAGAGGCAGTTTGTCGACATGTCTGTTGATAAACTCC
TGGAACAGTTTGTGCTCAATAAATACACGGGATTGGAGAAGCCAGAAATG
CCTGAACTGGAGTATGTGGCCTTGTCGAGTGGTTCTCGCCTTCAACAGCC
GCAGGTCTCGGCCAGCGCATCTAACTCCAATTCGGCCACCAGCATTCATG
CTGCTCTGCGGGCTGGAAATGCAGCACGACGGCCTCGGCAGTGCGTGTCA
TGGATCACGGGCGATGCCTTGCGCATCTCTCTGGCAGCGAGTGCAGCAGC
GTAGTATACCCTTGCGAGATCGATACTGGGAGCTATGGCTCTCCGGTCCA
ATCGCGACTGCTGGCGGAGCAATGCATCGGGAATACA
UFO09015.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:50:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8176-RG | 4549 | CG8176-RG | 430..1535 | 9..1087 | 4860 | 97.5 | Plus |
| CG8176-RF | 4726 | CG8176-RF | 430..1535 | 9..1087 | 4860 | 97.5 | Plus |
| CG8176-RE | 4465 | CG8176-RE | 430..1535 | 9..1087 | 4860 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:50:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9521415..9521976 | 38..599 | 2810 | 100 | Plus |
| 3R | 32079331 | 3R | 9522038..9522235 | 598..795 | 990 | 100 | Plus |
| 3R | 32079331 | 3R | 9522292..9522438 | 793..938 | 670 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:50:03 has no hits.
UFO09015.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:47 Download gff for
UFO09015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8176-RC | 323..1427 | 9..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:18 Download gff for
UFO09015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8176-RF | 430..1534 | 9..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:17 Download gff for
UFO09015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8176-RE | 430..1534 | 9..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:17 Download gff for
UFO09015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9522295..9522612 | 796..1086 | 91 | | Plus |
| 3R | 9522040..9522235 | 600..795 | 100 | -> | Plus |
| 3R | 9521321..9521350 | 9..38 | 100 | -> | Plus |
| 3R | 9521416..9521976 | 39..599 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:18 Download gff for
UFO09015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5347043..5347072 | 9..38 | 100 | -> | Plus |
| arm_3R | 5347138..5347698 | 39..599 | 100 | -> | Plus |
| arm_3R | 5347762..5347957 | 600..795 | 100 | -> | Plus |
| arm_3R | 5348017..5348334 | 796..1086 | 91 | | Plus |
