UFO09019.5prime Sequence
1117 bp (1008 high quality bases) assembled on 2011-08-10
> UFO09019.5prime
CAGTCGACATGACGGATAAAAAAAATGAAATACAGCCAGCGGCTGAGCCT
GTGGCTGAACCAGAGCCTTCTCCCGCGGCCGAAATAGCTCCTGCAAGTCC
CGATGGCTCCGGTCCAAGTGCTGCCGCTGCAGAAGAAGTCACCCCGAGTG
TTGCGACCGTTGAAGACACTACCCCGATTGCAGCCCCTGCAGAGAGTCAA
CCGTCCGGCGAGAGCAACGGCACGGCGGAGGCCAAGAAGCTGCCCGAGAT
CGCTAAAAAGAATGGCAAGGAGCCCGACCAGAATGACAAGGAGCCCGACC
AGAATGGCAAGGAACTGGCAGAGACCAATGACTTCAAGAACGTCTCCGAG
ACTGAGGGTCAGCAGAAGAAACTGCCCTACCCCAAGTCCGTGTTCTTCAT
CATCAGTAACGAATTCTGCGAACGTTTCAACTATTACGGCATGAGGACTG
TTTTGGTTCTGTATCTGAGTCGAGTTCTGGGCTATTCTGATGATACCGCC
ACCGTGGTCTTCCATATCTTCACCATGTTCGTGTACTTCCTGTGCGTTTT
TGGAGCCATCATTTCGGACTCTTGGCTGGGAAAATTCAAGACTATCCTGT
ATTTATCGCTGGTTTATATATGCGGATCGGTGCTGCTGACCCTAGGTGCC
ATTGGACCACTTAACCTGCCCATGGAAACGTTTACGATGTTGGGCCTGGC
GTTAATTGCCCTTGGTTCAGGCGGCATTAAGCCGTGTGTGTCGGCATTCG
GTGGCGATCAGTTTAAGGTGCCGGAGCACGTGAAGCAGATCACTTCGTTC
TTCTCGCTCTTTTACTTTTCGATCAATGCCGGATCGCTGATCTCCACCAC
GGTGACTCCAATATTGCGCGAGGACGTGTCCTGCTTTGACGACATTAACT
GCTATCCATTGGCCTTTGGAGTACCGGCCGTACTTATGATTGTGTCGGTG
ATCATCTTCGTTTTGGGACGATCCCTGTACAGATGAGCCACCGGCGTAAT
ATGGTGGTGCTGTGAGCAGTACATCTGACAGCCCTGACCACAATGTAGGA
AAAGAACATCCGCCGGGGAGCCTGCTGACTATGCCGATTAAAAGGTACGC
CCGCCAGTGATGACAGT
UFO09019.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:50:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2930-RF | 3701 | CG2930-RF | 1067..2182 | 7..1108 | 5070 | 97.8 | Plus |
| CG2930-RB | 2818 | CG2930-RB | 184..1299 | 7..1108 | 5070 | 97.8 | Plus |
| CG2930-RA | 2773 | CG2930-RA | 139..1254 | 7..1108 | 5070 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:50:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3876455..3877055 | 448..1041 | 2660 | 98.5 | Plus |
| X | 23542271 | X | 3875901..3876242 | 27..368 | 1710 | 100 | Plus |
| X | 23542271 | X | 3876313..3876393 | 367..447 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:50:18 has no hits.
UFO09019.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:49 Download gff for
UFO09019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2930-RB | 172..1299 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:24 Download gff for
UFO09019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2930-RA | 135..1262 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:24 Download gff for
UFO09019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2930-RA | 135..1262 | 1..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:24 Download gff for
UFO09019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3875902..3876242 | 28..368 | 100 | -> | Plus |
| X | 3876315..3876393 | 369..447 | 100 | -> | Plus |
| X | 3876455..3877137 | 448..1114 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:24 Download gff for
UFO09019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3769935..3770275 | 28..368 | 100 | -> | Plus |
| arm_X | 3770348..3770426 | 369..447 | 100 | -> | Plus |
| arm_X | 3770488..3771170 | 448..1114 | 96 | | Plus |
