UFO09020.5prime Sequence
903 bp (672 high quality bases) assembled on 2011-08-10
> UFO09020.5prime
GGAGGCACAAAAACTCACGGAACTGTTGCGCGCAACTATTGATCCGAATC
CGGAACAGCGCAAGGCGGCCGAGGATCAACTGGCCCAGATACACTAAATC
ATCGGATTTGTGCCCACCGTACTGCAGATCGTTATGCAGACGACGGTGGA
ACAGCCGGTGCGCCAGGCCGGTGCTGTCTACCTCAAGAATCTGATCAACA
GCAGCTGGTCGGACCACGAGGCCAAGCCTGGAGAGCCAATACCCTTCTCT
ATACACGAACAGGATCGGGCTATGATCCGTGGCGCTATTGTAGATGCTAT
TGTGCACGCCCCCGAGTTGATTAGGGTCCAGTTGTCTGTCTGCGTCAATC
ACATCATTAAAAGCGATTTCCCTGGACGCTGGCCACAGGTGGTGGATAGC
ATCAGCATATATCTGCAAAACCAGGATGTCAACGGCTGGAACGGAGCTCT
GGTAACCATGTACCAGCTGGTCAAGACCTACGAGTACAAGCGGCATGATG
AGAGGACGCCGCTAAACGAGGCAATGAACCTACTGTTGCCCATGATCTAC
CAGCTGATGGTCCGACTGCTGGCAGAGCAATCCGAGCAATCTGTGCTGCT
ACAAAAAGCAAATTCTCAAGATCTACTATGCCCTCACGCAATACCCCCTT
CCACTGGACCTCATTACCAAGGAGATCTTCTCGCATTGGATGGAGATCTG
TCGTCAAGTGGCTGATCGCACATGCCCGATAGCTCGCACCTGGACGATGA
TGACCGAACGGAGTTCCCCTACTGGAGACTACGAGTGGGCCCTGCACATC
ATGGTTCGCATGTCGACGATATGGCAGTCCCACTCATGTGGTAGTGAAAT
ATACCATAAATCGCAGAGTGGTATCTGCCCCCTTTAGCAGGGCGTGCTGG
AGG
UFO09020.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msk-RA | 3979 | CG7935-RA | 264..1174 | 1..903 | 4055 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:50:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8117594..8118086 | 323..813 | 2150 | 97.6 | Plus |
| 3L | 28110227 | 3L | 8117302..8117541 | 86..325 | 1170 | 99.2 | Plus |
| 3L | 28110227 | 3L | 8116442..8116529 | 1..88 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:50:22 has no hits.
UFO09020.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:49 Download gff for
UFO09020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msk-RA | 265..1175 | 1..903 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:26 Download gff for
UFO09020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msk-RA | 264..1174 | 1..903 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:26 Download gff for
UFO09020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msk-RA | 264..1174 | 1..903 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:26 Download gff for
UFO09020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8116442..8116529 | 1..88 | 100 | -> | Plus |
| 3L | 8117305..8117540 | 89..324 | 99 | -> | Plus |
| 3L | 8117596..8118093 | 325..818 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:26 Download gff for
UFO09020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8109542..8109629 | 1..88 | 100 | -> | Plus |
| arm_3L | 8110405..8110640 | 89..324 | 99 | -> | Plus |
| arm_3L | 8110696..8111193 | 325..818 | 97 | -> | Plus |
