UFO09022.5prime Sequence
1098 bp (992 high quality bases) assembled on 2011-08-10
> UFO09022.5prime
CAGTCGACATGACGGAAAGCGTGGAGCTGATGAACAAGTACGGCGAGCCA
CTGCGCTACGACCGGAACTTCACGGGACCGAGGCAGAGGGATCGCAGCTG
CACGGATGTGCCCTGCCTGCTGTTATTCGTCCTCTTCCTGGGCGGATGGG
CCTTCATAGCCCAATACGCCATCAGGAACGGCGATCTCAACAAACTGCTG
GTGCCCACGGACTCCTTTAACCGAAAGTGTGGCATGGACTCCGGAGTGCT
GAACAAGAAAAACCTATTCTTTTTCGACTTGAATCAGTGCATCGATCCAC
TTGTACCCATCACTGGATGTGACACTCCACAGGTTTGTGTGGAGACTTGT
CCCCGAGAGACGTTCGTCTGGGACACTATGAAGGACAAACAAAGTTTTGC
GGAGCTGCATAGTCGCCTCATCTGCTTGTCGGAGGAGCACAAGGCGCAGA
TTCGCACCAAATCGGACATTCAGGATGCCATTAACCAGAACCAGTGCGCA
CGCTGGTACATCAAGAGTGCTCCATTCCTCAAACGATGCCTCTTCGAGTT
CTCGCAGGGCGTGTGTGATTATATTCCCTCGTTTCTGCTAAATGGGGGAA
GGTCGAGGCGGGAGCTGCATATGTTGCCCGGAAACGCCACCACAGAAGTT
CAAATGCAGGCCGATGTCATGTACCAGAAAATGACGGATGCCCAGGCTCT
CGTTGTTCCACAGGCGAATGGCAAACAGACTCCAGTGGACGAGGAACCGA
TCATCCAGTGCAAGCGCAGACTCAACGAGGCTGTCATCAAGGAGAAGATG
ATGCAGACCGATACGAGGCTGGCCCAGCTCGTTGGTAACATGGTGGCCCA
CTTCTACAATGGCACAAACGACGCCCAGCTTTTGGAGAAAAGATTGTCGA
GGATCTTGTCAACTCTGTCGATCGTTTTGGTGCTTGCTTCTGCACCCTGT
AGCCTCACTGATCTACATCGCTCTATGCGCTTGCTCTCAGCTCGATTCTC
TGTCTCCATCTTCGGGTGCTTATCGCTGCTGTGTTATTACTCCTCGTAAG
CAGTACATCATTGGAAGAAAACGCTACGGTTCAGTAACTGCCTGAATC
UFO09022.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:49:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11880-RC | 3162 | CG11880-RC | 398..1490 | 9..1082 | 4880 | 97.5 | Plus |
| CG11880-RB | 3463 | CG11880-RB | 699..1791 | 9..1082 | 4880 | 97.5 | Plus |
| CG11880-RA | 3195 | CG11880-RA | 431..1523 | 9..1082 | 4880 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:49:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29125803..29126509 | 329..1025 | 3045 | 98 | Plus |
| 3R | 32079331 | 3R | 29125414..29125739 | 9..334 | 1630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:49:42 has no hits.
UFO09022.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:44 Download gff for
UFO09022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11880-RC | 393..1490 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:04 Download gff for
UFO09022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11880-RA | 426..1523 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:07 Download gff for
UFO09022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11880-RA | 426..1523 | 1..1082 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:07 Download gff for
UFO09022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29125409..29125737 | 1..332 | 98 | -> | Plus |
| 3R | 29125807..29126575 | 333..1082 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:04 Download gff for
UFO09022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24951131..24951459 | 1..332 | 98 | -> | Plus |
| arm_3R | 24951529..24952297 | 333..1082 | 96 | | Plus |
