UFO09023.5prime Sequence
1117 bp (1001 high quality bases) assembled on 2011-08-10
> UFO09023.5prime
CAGTCGACATGTCCTTCCTGCGCGGTTCCGTGAGCTATGTGTGGTGCACC
ACCAGCGTCCTGGGAAAGGGAGCCACCGGTTCCGTGTTCCAGGGGGTCAA
CAAAATCACCGGCGAATCGGTGGCGGTGAAGACCTTTAATCCCTACAGTC
ACATGCGACCGGCTGATGTGCAGATGCGGGAGTTCGAAGCCCTGAAGAAG
GTCAACCACGAGAATATAGTAAAGCTGTTGGCGATCGAGGAGGATCAAGA
GGGGCGTGGTAAGGTGATCGTGATGGAGCTCTGCACAGGCGGAAGTCTCT
TTAACATCCTGGACGATCCTGAGAACTCGTACGGTCTGCCGGAACACGAG
TTCCTGCTGGTCTTGGAACACTTGTGCGCCGGAATGAAGCACTTGCGGGA
TAACAAGCTGGTGCATCGCGATCTCAAGCCCGGAAACATAATGAAGTTCA
TCTCGGAGGACGGGCAAACCATATACAAGCTTACTGATTTCGGTGCTGCT
AGAGAACTGGAGGATAATCAGCCGTTTGCCTCTCTATACGGCACAGAAGA
GTATCTTCATCCCGATCTCTACGAGCGCGCTGTGCTGAGGAAGTCAATCC
AGCGATCGTTCACCGCCAATGTGGATTTGTGGTCGATTGGGGTCACGCTC
TACCATGTGGCCACCGGAAATCTGCCTTTTAGACCTTTTGGTGGAAGGAA
AAACCGAGAGACCATGCACCAAATCACCACCAAAAAGGCTTCTGGGGTGA
TTTCCGGCACTCAGCTGTCCGAGAATGGACCAATTGAATGGTCCACCACG
TTGCCACCGCACGCCCATCTCTCGCAGGGACTGAAAACCCTGGTGACGCC
TCTTCTAGCTGGACTTCTCGAGGAGAATAGGGAGAAGACCTGTCTTTCGA
TCGGGTTCTTCCATGAGGTGACGCTCATCCTCCGCAAGCGTGTCATCATG
TGTCTTCACCATCGGACTAGTTCGGTGGAGTGTCCTGAGCCAGACGAGCA
ATTGACACTTCCGAGAAGCGTATTTTCTGCAAACGAGTGCCGCCTGGGGA
GCCGATCTTTGTTCACACGAGCATCTGGGAGAGAAGTAACTCAGGACGAA
AGCTTAAGCATCTGGCA
UFO09023.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:49:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ik2-RC | 2551 | CG2615-RC | 177..1264 | 5..1078 | 4800 | 97.2 | Plus |
| ik2-RB | 2461 | CG2615-RB | 87..1174 | 5..1078 | 4800 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:49:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20676459..20677350 | 91..979 | 4095 | 98.5 | Plus |
| 2L | 23513712 | 2L | 20676301..20676389 | 5..93 | 430 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:49:46 has no hits.
UFO09023.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:44 Download gff for
UFO09023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ik2-RB | 65..1170 | 1..1092 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:07 Download gff for
UFO09023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ik2-RB | 84..1189 | 1..1092 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:09 Download gff for
UFO09023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ik2-RB | 84..1189 | 1..1092 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:09 Download gff for
UFO09023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20676298..20676388 | 1..92 | 96 | -> | Plus |
| 2L | 20676461..20677475 | 93..1092 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:07 Download gff for
UFO09023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20676298..20676388 | 1..92 | 96 | -> | Plus |
| arm_2L | 20676461..20677475 | 93..1092 | 96 | | Plus |
