UFO09024.5prime Sequence
1131 bp (1023 high quality bases) assembled on 2011-08-10
> UFO09024.5prime
CAGTCGACATGTCAGGCGCCAATCCCTTCGCCCAGTTCGAGAAAACTTTC
TCCCAGGCCGGCACAACATACAAGTACTTTGACCTCGCCTCCATCGATAG
TAAATATGATCAACTGCCCTACTCGATCCGAGTGCTCTTGGAGTCGGCGG
TTCGCAACTGCGACAACTTCCATATCCTAGAGAAGGACGTGCAGAGCATC
CTGGGATGGTCGCCCGCCCTCAAGCAGGGATCCAACGATGTGGAGGTGTC
CTTCAAGCCGGCCCGTGTCATCCTGCAGGACTTTACTGGAGTTCCTGCTG
TGGTGGACTTTGCAGCTATGCGCGATGCTGTTTTGGATCTGGGCGGCGAC
CCGGAGAAAATCAATCCCATCTGCCCCGCCGACTTGGTCATCGATCACTC
GGTCCAGGTGGACTTCGCCCGTGCGCCTGATGCTTTGGCCAAGAACCAGT
CACTGGAATTTGAGCGCAACAAGGAGCGCTTCACCTTCCTGAAGTGGGGA
GCCAAGGCCTTCAACAACATGCTGATCGTGCCACCTGGCTCCGGTATTGT
CCACCAGGTGAATCTGGAGTACTTGGCCCGCGTGGTGTTCGAGAATGACG
CAACCGATGGCTCCAAGATTCTGTATCCCGACAGTGTGGTGGGCACTGAT
TCCCATACCACGATGATAAATGGATTGCGCGTACTTGGTTGGGGAGTGGG
AGGCATCGAAGCGGAAGCTGTGATGTTGGGCCAATCGATTTCCATGTTGT
TGCCCGAGGTAATTGGCTACAAGTTGGAGGGCAAACTGAGCCCACTGGTC
ACATCCACCGATCTGGTGCTGACCATTACCAAGCACCTGCGACAGTTGGG
TGTGGTGGGAAAGTTTGTGGAGTTTTACGGCCCGGGAGTTGCGGAACTCA
GCATTGCTGACAGGGCCACCATCAGCAATATGTGTCCCGAATACGAGCCA
CCGTGGGAATACTTCCCCATCGATGAGATACTCTGGTTACATGAAGCAGA
CAATCGGTCCTGAAAAGAAGATCGAAATCATTCGCCAGTATCTGAAGGCA
CTCAGCCAGCTGGCGCACTATGCCTGGATGCGGCCAAGATTCCAAGTTAC
TCGAGATATCACCTTTGGATCTTGGTCGACG
UFO09024.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:49:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irp-1B-RA | 2901 | CG6342-RA | 55..1176 | 9..1131 | 5135 | 98 | Plus |
| Irp-1A-RA | 2882 | CG4900-RA | 76..1115 | 15..1049 | 1995 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:49:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10410779..10411291 | 1003..493 | 2340 | 98.8 | Minus |
| 3R | 32079331 | 3R | 22723351..22724054 | 976..276 | 1395 | 80.9 | Minus |
| 3R | 32079331 | 3R | 10411352..10411569 | 494..277 | 1090 | 100 | Minus |
| 3R | 32079331 | 3R | 10411628..10411799 | 279..108 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 10412620..10412715 | 108..13 | 480 | 100 | Minus |
| 3R | 32079331 | 3R | 22724117..22724283 | 279..113 | 340 | 80.2 | Minus |
| 3R | 32079331 | 3R | 22724359..22724454 | 108..13 | 195 | 80.2 | Minus |
| 3R | 32079331 | 3R | 10410670..10410710 | 1050..1010 | 190 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:49:50 has no hits.
UFO09024.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:45 Download gff for
UFO09024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irp-1B-RA | 95..1170 | 1..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:10 Download gff for
UFO09024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irp-1B-RA | 48..1123 | 1..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:10 Download gff for
UFO09024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irp-1B-RA | 48..1123 | 1..1076 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:10 Download gff for
UFO09024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10410779..10411289 | 495..1003 | 98 | <- | Minus |
| 3R | 10411352..10411567 | 279..494 | 100 | <- | Minus |
| 3R | 10411629..10411798 | 109..278 | 100 | <- | Minus |
| 3R | 10412620..10412721 | 4..108 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:10 Download gff for
UFO09024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6236501..6237011 | 495..1003 | 98 | <- | Minus |
| arm_3R | 6237074..6237289 | 279..494 | 100 | <- | Minus |
| arm_3R | 6237351..6237520 | 109..278 | 100 | <- | Minus |
| arm_3R | 6238342..6238443 | 4..108 | 96 | | Minus |
