UFO09025.5prime Sequence
1127 bp (1007 high quality bases) assembled on 2011-08-10
> UFO09025.5prime
CAGTCGACATGCTGCGCATTCCTGGAATGCCCCTTCTTCCGGGGACTCTC
TTTCGCGATGTATCCAAGGGACATTACCCCAAACCGCAATCGCTGGCCAA
TGTCCAAGGTCTGAGCATGCTGAGTGATCGCCAGCAACCGGCTCCTGTGG
AATCGGGCAGCGTTACGGTGGACATAAGCTGTCCCCCAGTTGGGGCGTCC
TCCATATATCCGCCACGTTCGGGTCCCCGTATGCCTCCATGGCTGGCGTA
TGACAAGAAGGTGCTGTGCTTCCATGCCTACTTCAAGCAAACCCTTCAGG
AGGTCTACCATGCGCCCTATCTGGTGCGCAAGGTTAAGATCTACTACTAT
CTGGAAGATGGTACTTTAGAGATCTACGAGCCCCGGGTGGACAACTCGGG
AATTGTGCAGGGATGTGTAGTTCATAGGCAGCGGGTCCAGAAGGCGCCGC
CGTGCGATAATGAGTTCATGTCCCTCATCGATCTGAACGTGGATCAGACT
GTTCAGATATTTGATCGTCAGTATCATATCACCGATTGCGATCCGTTCAC
AAGAACTTTCTTAAACAAACGCGGCATAACCGTTCCCGATCCGGTCAAAT
CGCCATGCGATCCCACCGAGGAGCAACGAAAGCGTGAAAACCAACCGCGA
TCTGGTAATTTAATCCCAAAGAATCATCCGTTTGCCCAGTTCCTCAAGTA
CGATAGGCAAATACTCAAGTTCCAGGCGTACTGGGACGATAGAACCGAGT
TCGGAGACGTACGCAAGCTGGAGCTGTGCTACTATCTCTCCGACGATACC
ATCGAAATCAAGGAGCAGCACATTCGCAACTCAGGTCGCGACGGCCCAAC
CGTTTTTTCTTAAACGCGGGCGCTTAGCTCGAGAGTTCGAAGGACTCCAG
CTGCCAGGACAGATGACCCCGATGACGCTACTGAACGTCCTGGCACCACA
TGCGCAACGTGCGCTACTGCGTGGATCGCTGACACTGGAAACAAGAAATT
CATTACTATTAGGGAAAGGATCCTCCAGAATAGGCAGTGTGATTAACGTG
TATGCGTGCCGGTGGTGATATCGGAACTGAATCCTTCACCAGAACCTACA
CGGCAGCGATATGCATAAGAATTTACC
UFO09025.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:50:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Efhc1.1-RA | 2559 | CG8959-RA | 77..1187 | 9..1113 | 5050 | 97.8 | Plus |
| Efhc1.2-RA | 2572 | CG11048-RA | 401..700 | 232..531 | 300 | 73.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15782978..15783525 | 607..60 | 2740 | 100 | Minus |
| X | 23542271 | X | 15782647..15782922 | 883..607 | 1335 | 99.6 | Minus |
| X | 23542271 | X | 15781833..15782007 | 1054..883 | 460 | 93.2 | Minus |
| 2R | 25286936 | 2R | 20240390..20240689 | 232..531 | 300 | 73.3 | Plus |
| X | 23542271 | X | 15783581..15783634 | 62..9 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:50:40 has no hits.
UFO09025.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:52 Download gff for
UFO09025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8959-RA | 77..1150 | 9..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:35 Download gff for
UFO09025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Efhc1.1-RA | 77..1150 | 9..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:32 Download gff for
UFO09025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Efhc1.1-RA | 77..1150 | 9..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:32 Download gff for
UFO09025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15783584..15783634 | 9..59 | 100 | | Minus |
| X | 15781807..15782007 | 883..1079 | 92 | <- | Minus |
| X | 15782648..15782921 | 608..882 | 99 | <- | Minus |
| X | 15782978..15783525 | 60..607 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:35 Download gff for
UFO09025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15675840..15676040 | 883..1079 | 92 | <- | Minus |
| arm_X | 15676681..15676954 | 608..882 | 99 | <- | Minus |
| arm_X | 15677011..15677558 | 60..607 | 100 | <- | Minus |
| arm_X | 15677617..15677667 | 9..59 | 100 | | Minus |
