UFO09028.5prime Sequence
1108 bp (1010 high quality bases) assembled on 2011-08-10
> UFO09028.5prime
CAGTCGACATGATTATGACGATGATGCAGACGGTAAGGGCATGGCAACAG
GAATCGGATGTGGAGCACCGAAAACAACATAAGCAGCGATGGCGACCTGA
TGGGGCACACATATCAGCGGCTTACGACCTCAACAGTGATAATGACGACG
GCCACCACAGGGTGGTGCATAATCAAAACAACGGCAGCCCAAACAGCTCT
CCGAATCAGAGCACTTCCGCCTTCCGACAGCGGCAACCGCACCACCCACC
CACCGGACAACAACCGCCCCGGCTGCCCTGCACCGTAACCCACTTCTCCG
CACACTGGAAAACGCTGCTCATCCTGCTCACCCTGCTCTCCGCTTCCACG
CTGACAGCCTCCGCCAATGTCACCAGCACCATCAGTCCGCCCATCAACGG
CAGCAGCACCGATTACATCCTGCTCTATGGCGAATCCACCACATCCCTTG
TGCCCGCCCTGACCACCGGACTCTCGGGGGACGGAAGTGGTGCGGTTATC
GAGGACGAGGAGGATGCCGAGAAGGCCAGCGAGTACATCTTTGATCGCAC
CGATGTGCGCATAATATTCATCACACTCTACACACTGGTGTTTTGCTGCT
GTTTCTTTGGTAACCTCCTTGTTATTTTGGTGGTCACATTATCACGACGA
CTGCGCTCAATAACCAACTTTTTCCTCGCCAACTTGGCGTTTGCCGACTT
CTGTGTTGGACTCTTTTGTGTGATGCAGAATCTGTCCATCTATCTGATAG
AAAGCTGGGTCTTTGGCGAGTTCCTCTGCCGCATGTACCAGTTTGTCCAC
TCCCTGAGCTACACGGCCTCCATTTTCATCCTGGTTGTCATCTGTATGGA
GCGCTACTTTGCCATCGTACACCCCATTACCTGCAAACAGATCCTAACTG
CGGCTCGTCTGAGATGGTCATTGTCACAGTTTGGATTACATCGGCAGTTT
ACTCCACCGCCCAAGTTTGTTTTCAGCAGACCATTAGAACATCCACACGC
AGACGGCAGAGAGAAATTTGTTGTCCTGGAACGTGAGAATGTTCCACTCC
AGTGCTGACATGAATAACCTTGTGCTTCCCTACGTTATGCGGCTCCTTGG
GGAAGACG
UFO09028.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:50:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TrissinR-RE | 3601 | CG34381-RE | 1290..2400 | 5..1108 | 5035 | 97.7 | Plus |
| TrissinR-RD | 3637 | CG34381-RD | 1290..2400 | 5..1108 | 5035 | 97.7 | Plus |
| TrissinR-RC | 2811 | CG34381-RC | 500..1610 | 5..1108 | 5035 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:50:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5845348..5845954 | 5..611 | 3020 | 99.8 | Plus |
| 2L | 23513712 | 2L | 5850098..5850258 | 753..913 | 805 | 100 | Plus |
| 2L | 23513712 | 2L | 5848341..5848486 | 609..754 | 730 | 100 | Plus |
| 2L | 23513712 | 2L | 5850829..5850920 | 912..1002 | 315 | 96.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:50:50 has no hits.
UFO09028.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:54 Download gff for
UFO09028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34381-RB | 450..1451 | 1..1002 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:40 Download gff for
UFO09028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TrissinR-RC | 498..1499 | 1..1002 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:35 Download gff for
UFO09028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TrissinR-RC | 498..1499 | 1..1002 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:35 Download gff for
UFO09028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5845346..5845952 | 1..609 | 99 | -> | Plus |
| 2L | 5848342..5848486 | 610..754 | 100 | -> | Plus |
| 2L | 5850100..5850259 | 755..913 | 99 | -> | Plus |
| 2L | 5850831..5850920 | 914..1002 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:40 Download gff for
UFO09028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5845346..5845952 | 1..609 | 99 | -> | Plus |
| arm_2L | 5848342..5848486 | 610..754 | 100 | -> | Plus |
| arm_2L | 5850100..5850259 | 755..913 | 99 | -> | Plus |
| arm_2L | 5850831..5850920 | 914..1002 | 96 | == | Plus |
