UFO09029.5prime Sequence
1113 bp (1015 high quality bases) assembled on 2011-08-10
> UFO09029.5prime
CAGTCGACATGAATTCTTCCAGCGTGACGCCGCGTTCAGTTCGTAGTAAC
AAAGCATTCTTGCTGAGGACAGCTGGAAAGGCGGAAAAGCAAGCCTCAGA
CAAAGCTACATGGTCTCGCACTTCTTCTTGTGGTGGCGTCTTCTCTACTC
CTCCCACCCAGAATGGCGACGGAAGCCCAAACAAAGGTAGGCTCAGTCAC
ATTCCAAATAGGCGTGGAGCGAGTCGGTCGTCTATCCATTCGCGAAAAAC
TTCTCTGGAACGGGTTACTTCTTCGACGAAAGCGCGCCCGTGTGTCAGTA
CGTATTCGTTGCCCAATCGACGGGTCGAGCCCGAGCATAAAGTAGTTGAG
CCCGATCGGAAAACTGATATCGATGAGTTGAATCCCCCCAAGCGGAACGT
GGTTCCCATAAAGACGCATGCCCAGTCAGCACAATTGGTTAAGTCAACGA
CATGCGAACCTTATCAAAATGTAAAGAAGCCTGAAAAGATGTCGCATCGC
CGTGTCCTGGAGATGAACCGGATGCGGGTCTTTGATACGCAGAAAAAAAA
ACTGGAGAACCTGCAGTCCGAGTTTATGCACAAGATCCGGTTAATGGGTT
CGGAGCTCCGGAATCAAGGGGTCTTCAAGTTTGTGGGTCTGACTGTAAAC
GATGAATGCAAGCTTGTGGTCCACCATGATGATCTACTTCGATTGCCCAA
GAGTATTCCCGCCGAAAGTATGAATGACTTGAAAACCAGGTGTCGTGCGA
TTGTAGATCAGGGGGTTTTGTTAATCTACGACCATATACCAAGAATTCAG
AGGGCTAAAAATGATCTCGAGGCTAGTGAAAAGCGTGAGGAAACTCAAAA
AAAGTTGTCTAACCTAGTGGAAGAAAAAATGAATTTAATCGTCGAGGAGA
TCGAACAGTTGTGCGTGCATGCTCCAAACAAGAGTCACCCAACAAAGTCT
CTATCGCGAGAATGTCCGAGTTGCGTTCCCAGAAACAGGCATGGAGTTCG
TTTTTTGACGCCCAGAAGGACACACTGAACAGAATGAACCAGTGCGGATC
GAGCTCGATGCAGCTGAAACAGGACCTGCAGTCCAGATCGATCATGTAGA
GCTGAAAGGCTGC
UFO09029.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:50:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SIP2-RA | 2973 | CG13164-RA | 172..1279 | 9..1105 | 5165 | 98.5 | Plus |
| SIP2-RG | 3025 | CG13164-RG | 172..1279 | 9..1105 | 5165 | 98.5 | Plus |
| SIP2-RE | 2910 | CG13164-RE | 172..1279 | 9..1105 | 5165 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:50:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12305529..12305872 | 456..113 | 1720 | 100 | Minus |
| 2R | 25286936 | 2R | 12305220..12305472 | 708..456 | 1265 | 100 | Minus |
| 2R | 25286936 | 2R | 12304964..12305125 | 870..709 | 810 | 100 | Minus |
| 2R | 25286936 | 2R | 12304686..12304902 | 1078..869 | 565 | 94.5 | Minus |
| 2R | 25286936 | 2R | 12305931..12305998 | 113..46 | 340 | 100 | Minus |
| 2R | 25286936 | 2R | 12306058..12306098 | 49..9 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:50:56 has no hits.
UFO09029.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:54 Download gff for
UFO09029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP2-RG | 164..1268 | 1..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:42 Download gff for
UFO09029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP2-RE | 164..1268 | 1..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:37 Download gff for
UFO09029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP2-RE | 164..1268 | 1..1095 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:37 Download gff for
UFO09029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12304671..12304901 | 870..1090 | 93 | <- | Minus |
| 2R | 12304965..12305125 | 709..869 | 100 | <- | Minus |
| 2R | 12305220..12305471 | 457..708 | 100 | <- | Minus |
| 2R | 12305529..12305871 | 114..456 | 100 | <- | Minus |
| 2R | 12305931..12305998 | 46..113 | 100 | <- | Minus |
| 2R | 12306062..12306106 | 1..45 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:42 Download gff for
UFO09029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8192176..8192406 | 870..1090 | 93 | <- | Minus |
| arm_2R | 8192470..8192630 | 709..869 | 100 | <- | Minus |
| arm_2R | 8192725..8192976 | 457..708 | 100 | <- | Minus |
| arm_2R | 8193034..8193376 | 114..456 | 100 | <- | Minus |
| arm_2R | 8193436..8193503 | 46..113 | 100 | <- | Minus |
| arm_2R | 8193567..8193611 | 1..45 | 91 | | Minus |
