UFO09032.5prime Sequence
1124 bp (1037 high quality bases) assembled on 2011-08-10
> UFO09032.5prime
CAGTCGACATGGCAGCGGATCAGGCCCATTTCCAGCAGCTTCTGGCCTCC
CTCTTGTCCACGGACAACGATGTTCGCCAGCAGGCGGAGGAAGCATACAA
CAATCTTTCAAGAGAGCTGAAGGTGACGCATCTCCTGGGCAACATCCAAA
ATGGCCAGCAGTCGGAGGAGGCTCGACAGATGGCCGCCGTGTTGCTGCGC
CGCCTGTTTACCACCGAGTTCTTTGATTTCTACAAAGGGCTTCCAGCTGA
ATCCCAGAACCAATTGCTTCAGCAGATCCTTTTGGCCGTGCAGCAGGAGG
TGACGCCGCAGCTGCGTCGCAAGATTTGCGAGGTAGTTGCCGAGGTGGCC
AGGAATCTGATCGACGAGGACTGCAACAACCAGTGGCCCGACATCTTGCA
GTTTCTCTTTCAATGCGCTAACTCGCCTACGCCGCAGCTGCAGGAATCGG
CACTGCGGATCTTCTCTAGTGTGCCTTCCATATTTGGAAACCAGGAAGCT
CAGTACATTGATCTGATCAAGCAGATGCTTGCCAAGAGCATGGACGCTGG
ATCCGATCCGGAGGTCCGAGTACAGGCCGTGCGAGCCGTCGGAGCCTTCA
TCCTCTACCACGACAAGGAGAACGAGACGGCCATCCACAAGCACTTCGCT
GATATGCTGCCCCGCATGATCCACATCACTGGCGAGACCATCGAGGCCCA
GGATGATCAGAGTCTGCTAAAGCTCCTGATTGAGATGACCGAGAATTGCC
CGAAGTTCCTGCGTCCCCAGCTGGAGTTCATTTTTGAGGTCTGCATGAAG
GTTTTCAGCTCGCAGACTTTGAGGACAGCTGGCGTCACCTAGTGTTGGAA
GTTATGGTGTCGCTCGCCGAGAACGCCCCGTCGATGATACGCAAGCGAGC
GGACAGTATATCGTGCCCTGATCCCGCTGATTCTCATATGATGACGGATT
TGGATGATGACGAGAACTGGTCCACCGCCGACGTGGTCGATGATGACGAT
CCACAGCGACAAACAACGTGATCGCCGAGTCCTCGCTGAATCGCCTTCGC
CTGGTGATTGGGAGGAAAAGATGTGCCTCCGCTCGTAATGGACGCCTCTG
CGTATGTTGGACATGACCAAATTG
UFO09032.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:51:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Karybeta3-RB | 4186 | CG1059-RB | 334..1426 | 9..1101 | 5165 | 98.6 | Plus |
| Karybeta3-RA | 4364 | CG1059-RA | 512..1604 | 9..1101 | 5165 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:51:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4650798..4651655 | 239..1095 | 3835 | 98.3 | Plus |
| 3R | 32079331 | 3R | 4650583..4650734 | 88..239 | 760 | 100 | Plus |
| 3R | 32079331 | 3R | 4649687..4649768 | 9..90 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:51:09 has no hits.
UFO09032.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:56 Download gff for
UFO09032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Karybeta3-RA | 465..1569 | 9..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:48 Download gff for
UFO09032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Karybeta3-RA | 512..1616 | 9..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:44 Download gff for
UFO09032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Karybeta3-RA | 512..1616 | 9..1110 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:44 Download gff for
UFO09032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4650585..4650734 | 90..239 | 100 | -> | Plus |
| 3R | 4649687..4649767 | 9..89 | 100 | -> | Plus |
| 3R | 4650799..4651672 | 240..1110 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:48 Download gff for
UFO09032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 475409..475489 | 9..89 | 100 | -> | Plus |
| arm_3R | 476307..476456 | 90..239 | 100 | -> | Plus |
| arm_3R | 476521..477394 | 240..1110 | 97 | | Plus |
