UFO09037.5prime Sequence
1090 bp (1002 high quality bases) assembled on 2011-08-10
> UFO09037.5prime
CAGTCGACATGACGTCACTGGGCGGAAGGGCGTTCTTGTGGATATATTTG
GTTTTTCTAATAGCTGAGATCTCTCATTCGGATGCAGATTCAATTGATGA
TCAGTGCAGGCACGCAGACAGCTGCGAAAGATGTTTATCCGCTCATCTGG
AATGCGCTTGGTGCACGGACAAGGAATACCAGGTGGGATATCGTTGTCTC
TCTCGCCGGCAACTACTTAACTACAACTGCAGTGAAACGGATATATACGA
GAACCAGCCGGTCCTAGATGTCCTTCAGGATAAGCCCCTAAAGGACTACG
AAACCAGTGATCAGGCTGTCCAAGTCACACCCCAGCGGGCATACCTTAAG
TTGGTCAAAGGAAACACGCAAAGAATGAAGCTGAGCTATAGAACTGCACG
CAACAATCCACTCGATTTGTACGTATTGATGGATCTAACCTGGACAATGA
GGGATGACAAGAAAACCCTGGAGGAGTTGGGAGCCCAACTCAGTCAGACT
CTTAAAAATCTAACAGGAAACTACAGATTGGGATTTGGTTCTTTCGCGGA
CAAGCCAACTCTACCCATGATTCTGCCACAGCATAGGGAAAACCCCTGTG
CTGCGGAGCGGGCCACGTGTGAACCAACCTATGGATATAGACATCAACTT
TCGCTAACCGATGATATACCAGCGTTCACCTCAGCCGTGGCGAACAGCAA
AATCACTGGAAACTTGGACAATCTCGAAGGTGGCTTGGATGCTCTAATGC
AGGTTATAGTGTGCACCAAGGAAATCGGCTGGAAGGAACAAGCTCGAAAA
GTGGTGATCTTAGTGACCGATGGCTTTATGCACTTAGCGGGGGACGGTCT
TCTAGCAGTATTATCCAGCGCAATGATAAGCAGTGTCACCTGAATAAAGC
AGTGAGTACACGGGTTCATTGAACTACGACTACCCTCGCTGGAAGAAATC
TATCGGGGAGTTGCTTCGTCGCAGATTAATGTAATCTTTGCTGTCACCGA
GGAGGTTGTAAGTAGCTATTGGGAACTCCATGCCTATGAGAAATTAGTTT
ACGTGACACCTTAGCGGCTGATCCTCTTAATTATTGGACT
UFO09037.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:51:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Itgbetanu-RB | 3076 | CG1762-RB | 102..1189 | 9..1088 | 5010 | 98.2 | Plus |
| Itgbetanu-RA | 3340 | CG1762-RA | 102..1189 | 9..1088 | 5010 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:51:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21054992..21055664 | 359..1028 | 3120 | 99.3 | Plus |
| 2L | 23513712 | 2L | 21053456..21053645 | 172..361 | 950 | 100 | Plus |
| 2L | 23513712 | 2L | 21053134..21053221 | 9..96 | 440 | 100 | Plus |
| 2L | 23513712 | 2L | 21053284..21053362 | 96..174 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:51:30 has no hits.
UFO09037.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:00 Download gff for
UFO09037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaInt-nu-RA | 303..1338 | 9..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:59 Download gff for
UFO09037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Itgbetanu-RA | 102..1137 | 9..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:52 Download gff for
UFO09037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Itgbetanu-RA | 102..1137 | 9..1039 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:52 Download gff for
UFO09037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21053458..21053644 | 174..360 | 100 | -> | Plus |
| 2L | 21053134..21053221 | 9..96 | 100 | -> | Plus |
| 2L | 21053285..21053361 | 97..173 | 100 | -> | Plus |
| 2L | 21054994..21055664 | 361..1028 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:59 Download gff for
UFO09037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21053134..21053221 | 9..96 | 100 | -> | Plus |
| arm_2L | 21053285..21053361 | 97..173 | 100 | -> | Plus |
| arm_2L | 21053458..21053644 | 174..360 | 100 | -> | Plus |
| arm_2L | 21054994..21055664 | 361..1028 | 99 | == | Plus |
