UFO09038.5prime Sequence
1147 bp (1047 high quality bases) assembled on 2011-08-10
> UFO09038.5prime
CAGTCGACATGACGCTTGGTGATGTACGAGTTGAGAACAAAATACAAACA
AGAAGTGAAACCTGTGCTATCAATGGAATGGCTTTAGACAACAAGAATGG
AATCATAAAACAGAATGACGCAACCATTTCGTTCTTACGTGCTGCTCGCA
GCGGAGACATTAAAAAGGTGATGGATTTTTTGGACTGTGGAGAAATATCA
GACATAAATAGCTGCAATGCAAACGGTCTTAATGCACTTCATTTAGCTGC
AAAGGACGGATATGTGGACATATGCTGCGAGTTGCTAAGAAGGGGCATAA
AGATCGATAATGCCACAAAAAAGGGAAACACAGCCTTGCACATTGCGTCT
TTGGCGGGGCAGCATGATGTCATCAATCAGCTAATTTTATATAATGCTAA
TGTGAACGTGCAGTCTCTTAATGGTTTCACCCCGCTTTATATGGCAGCAC
AAGAAAACCACGACAATTGTTGTCGAACCCTATTGGCCAATGGGGCAAAT
CCGTCATTATCTACAGAAGATGGCTTCACACCACTTGCGGTAGCAATGCA
GCAGGGACACGACAAAATTGTAGCTGTCTTACTTGAAAATGACGTGCGTG
GGAAGGTTCGCCTACCAGCTCTTCATATTGCTGCGAAAAAAAATGATGTA
AATGCAGCTAAGTTATTACTTCAACATGATCCCAATGCTGACATCGTTTC
CAAATCAGGATTCACCCCTTTGCACATAGCAGCTCATTATGGGAACGTGG
ACATTGCCACTTTGCTTTTGAACAACAAAGCAGATGTAAACTATGTAGCC
AAACATAACATAACTCCCTTACATGTGGCATGTAAATGGGGAAAGTTATC
ACTTTGCACTTTATTACTGTGCCGAGGAGCAAAATAGATGCGGCGACTCG
TGATGGTCTTACACCACTTCACTGTGCGTCTCGCTCGGTCATGTAGAGTT
TTAGCATTTGTTGCAGCAAACGCGCGATACTGACAAAAACGAAGATGTCT
GTCTGCGCTCACATGCTGCACAGGTGAGCACGACGAGCAGCTCATTATGT
GACACAGCTCCAGTAATGAGTACTGTGATACTAACAGCTCTCCGTGCTGC
TCTGGGTCATGTAGGTAGCTAGCCTTACTGATACAGCATCCATGCCG
UFO09038.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:51:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ank-RE | 5777 | CG1651-RE | 69..1119 | 9..1046 | 4930 | 98.8 | Plus |
| Ank-RD | 5291 | CG1651-RD | 217..1267 | 9..1046 | 4930 | 98.8 | Plus |
| Ank-RC | 5176 | CG1651-RC | 102..1152 | 9..1046 | 4930 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:51:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 122625..123422 | 1010..222 | 3585 | 98.4 | Minus |
| 4 | 1348131 | 4 | 123785..123895 | 221..111 | 555 | 100 | Minus |
| 4 | 1348131 | 4 | 129322..129426 | 113..9 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:51:34 has no hits.
UFO09038.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:00 Download gff for
UFO09038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ank-RC | 42..1097 | 9..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:02 Download gff for
UFO09038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ank-RC | 102..1157 | 9..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:54 Download gff for
UFO09038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ank-RC | 102..1157 | 9..1051 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:54 Download gff for
UFO09038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 122580..123422 | 222..1051 | 98 | <- | Minus |
| 4 | 123785..123892 | 114..221 | 100 | <- | Minus |
| 4 | 129322..129426 | 9..113 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:02 Download gff for
UFO09038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 143206..144048 | 222..1051 | 98 | <- | Minus |
| arm_4 | 144411..144518 | 114..221 | 100 | <- | Minus |
| arm_4 | 149948..150052 | 9..113 | 100 | | Minus |
