UFO09039.5prime Sequence
1132 bp (1019 high quality bases) assembled on 2011-08-10
> UFO09039.5prime
CAGTCGACATGGATTTAACAGATCCATTATTAATTACAAAGTCTCAGCAA
GTCAACAGCCAAGAAGTTGATTTTCAGAAAAAAACTGAGGATACATTTCC
TTCAAAGTTTCATAAAAATAAAGCTAGTTGTGGACTTTTGGCTGTTAATG
AAAGTCGCTGTACAGACCATCAATTACAATGTGAAAACAATATCGTGGGG
TTGTCATTAGAAACTCAAATTGCAGAAAATTCTTCAATAAATGTTTCGAG
AGAACTTAAACCTCACGATCACACTTTTCCGAAAGATAAACAAACTTTTA
AACAAATATCAGATGAATTAAGGAAGTCATATGAAAATATTAATAAAGTT
CAGAATATTAAAAAATCCCAGTCTGTAGAAAATTTTGAAAAATGTTCTGA
AATAAATTTAGCCAATAAATGTTTATATACAAATTTAAATACAAGTCCTA
AGGAAAGAAATGCCTTGGATAAGCAAGCAATGTTTATTAAATTTCATTCT
CTGGAATTGTGCACTGATAAAGTATGTAGTCTACACATACATGAAAACTT
TTGTACTGATATCCATAAATGCGTAGTCGATTCCGAATCGAATAAGCCAA
ACAAAATGAAAAAGTGCTTAGATTATGAAAGCGTTAAAAGGTATCCTTGT
AAAGTTTCTAATGAACCACCTCAACATAATACGGCATCAAAACCTCAAAT
CTTATATGAGACTCGTCCTATCTACCCGAATGTACCGTATAGCCCTTATA
GTACTCCTTTCAGTAGTCCTCGATCTAGTCGACGGAAACCAGCTTTTCGG
GAGTCTAGAAGGATATCGATTGATAAATCTGGAAGTTTTCTTCAGTTAAA
CCAATATAGACTAATGGAACAAATTGGACAGGGATCCTACGGACTCGTTA
AATTGGCTTACTCCGAGAGATTCCACTCATTATGCAATGAAAATTCTTTC
AAAAAAACGTCTCCTGCGTCAAGCTGGTCTTATGCGCGAGGACCTCGGAA
GCAACATCACTCTAGATCGAGTTAAGAGAATAGCAGTTTAAAGAACTGAT
CATCAACGTCGTAAAGGTGTAGATGCCTGATGAACCACTTGAATCATAAT
ATGGTTTGAGTGGTAACAGGTGAAGTTCTTTA
UFO09039.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:51:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17698-RF | 2560 | CG17698-RF | 277..1377 | 9..1093 | 5065 | 98.2 | Plus |
| CG17698-RE | 2326 | CG17698-RE | 277..1377 | 9..1093 | 5065 | 98.2 | Plus |
| CG17698-RD | 2506 | CG17698-RD | 277..1377 | 9..1093 | 5065 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:51:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 23740212..23741085 | 9..882 | 4370 | 100 | Plus |
| 3L | 28110227 | 3L | 23746188..23746336 | 880..1023 | 515 | 96 | Plus |
Blast to na_te.dros performed 2014-11-26 23:51:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| accord | 7404 | accord ACCORD 7404bp | 3447..3546 | 240..337 | 117 | 59 | Plus |
UFO09039.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:01 Download gff for
UFO09039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17698-RB | 279..1361 | 9..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:04 Download gff for
UFO09039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17698-RD | 277..1359 | 9..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:56 Download gff for
UFO09039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17698-RD | 277..1359 | 9..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:56 Download gff for
UFO09039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 23740212..23741084 | 9..881 | 100 | -> | Plus |
| 3L | 23746190..23746399 | 882..1079 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:04 Download gff for
UFO09039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 23733312..23734184 | 9..881 | 100 | -> | Plus |
| arm_3L | 23739290..23739499 | 882..1079 | 91 | | Plus |
