UFO09040.5prime Sequence
1129 bp (1026 high quality bases) assembled on 2011-08-10
> UFO09040.5prime
CAGTCGACATGTCGAATTCTGTGGAAGAGTGCAAGGATGAGGACCTGCCG
GCAAACACGCTGGAGCACTTCACCGAACTGCAGCAGGTGCTGGAGATGAT
CGACAACATCAAATCCATTGCCGCTAACACCTTCGAAAGGGAGTTCGAGC
AGTACGCCCAGGTTTTGTCTAGATATCAGGAGCAGCCACACCTCTTGGAT
CCACATTTGGAGGAGTTACTCGGCAAACTGCTCCACAAGATTCGGAAGCC
AGATCTAGACACTGGAGAGCTTCATGCAGCCTTCAAGTATCTCTACATCA
TCTGCAAAGTGCGCACCTATAAGGTCCTGGTAAAGTTTATGCCACACGAA
CTGAGCGATCTGGAGTTTGTTCTGGATTTGCTGGGTCAGCAAAATCCCAA
GGAGTTCGAACAGTGGGAAACGCGCTATATACTGCTCCTGTGGATGTCTA
TCCTGGTCCTAAATCCCTTTCACATGTCGAGACTAGATGCCTATGACACC
TCCACATCTGCTCCCACCACCAATTGCAGTCCCGTGAACCATGTTCAGTC
GAAGAACACCAAGATGGATCGCATCTTCGAGCTCATCCAGCTTTATGTGT
CCTCCAACGACACATGCAGCAGCATGGCTGCTTTCCTGGCCGCCAAGTAT
TTCATTCGCAGTGACATCAAGGATCTATATCTGGAGCGCTTCCTGGACTG
GATTATGGAGCAGCACCAAGCGGACACGTTGAACGTCAAGTTCGGCCAAC
TGGCTGCAGTGGGCTGCTATTTTAAAGCACGGAAAGCGAGAAGATCTTCT
GCCCTATGCGGACAAACTTCTTCAGTGGATCACTTCCTGTCAGTACAAGG
ATGACAACGACTTTCTCAAGTACAGAACTATGTAAAAATCATCCAGAGAA
TTGGATTGGTTCATTTGAAGCCACGCATTGCCAGCTGGCGGTAAAAAGGA
GGCACTCGTTCACTGGCCACCAATCTAACCAGACAACTGGCGGCAGGAGG
GTGAACCAGTTGTTTTGGAGCAATCCCTGGAGGAAGGCGGGGGAAAATAG
TGGTCCCCGAATGGCAAAAAAAAGGGGATTGGAGGGGCTGCCTCCAGGAA
TGCCAGCGGGAGGAACGATATACGGCTGG
UFO09040.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:51:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7261-RA | 3910 | CG7261-RA | 129..1241 | 8..1124 | 5105 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:51:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2147646..2148590 | 8..952 | 4600 | 99.6 | Plus |
| 2L | 23513712 | 2L | 2148645..2148752 | 950..1060 | 330 | 94.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:51:44 has no hits.
UFO09040.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:01 Download gff for
UFO09040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7261-RA | 124..1190 | 1..1074 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:07 Download gff for
UFO09040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7261-RA | 125..1191 | 1..1074 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:58 Download gff for
UFO09040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7261-RA | 125..1191 | 1..1074 | 98 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:58 Download gff for
UFO09040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2147642..2148589 | 1..951 | 99 | -> | Plus |
| 2L | 2148647..2148765 | 952..1074 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:07 Download gff for
UFO09040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2147642..2148589 | 1..951 | 99 | -> | Plus |
| arm_2L | 2148647..2148765 | 952..1074 | 91 | -> | Plus |
