UFO09042.5prime Sequence
1106 bp (996 high quality bases) assembled on 2011-08-10
> UFO09042.5prime
CAGTCGACATGGCCATCAACTTTTCGGCTTCCTTTGCGGCTTGCATAGCA
GCCGGGCTAAAGGTGCCGCGCCAGATAATGTACTGCATCACTCAGGACAC
GGGCCAGCCATACGTGCTCTATAAGGACTCGCAGGACGCTGAACGGAACC
CCGGTGCCATAGGTGCCACTCCCGCCCAGTGGGGCAGCGAGATGTACCCC
AACATCCAGCAACAGGCCCAGCAGCACCTAACTGCCCAGCAGCAGCAACA
GCAGCAGCAGCAGAACGCGGCGCAAGCAGCGGCCCAGGCGGCAGCTGTGG
CAGCGGCAGCGGGACAGCCGCAAAGTCCGCCGGGTGGCGGACAGGAGGCC
CGCGACAACGGCAGCGGTGATGGCCGCCAGCAGCAGGTGTCGCCCTCCTC
GAGTCCGTACCCTTCGGTCCAGCAGCAGCAGAGGGCAAACGGGGCAGGCG
ACGAGGACCCCATGAACCACCAGCTCGCCAACCAGCAGAACCCCGCTCCC
AATCAAAACCAAAGCAGCAATGACCCCCAGCATTCGGGCTCCAACGCGGG
CGAATCAGGCAACCCGCATGTCCAGCAGAACGGCGGACCGCAAAATGACC
CCGGCAACAGTTTTCGAACACCGGACTATTATGACCCCCGCCACGCGGCA
CCGCAAGGGGGGATGCTGGCACCGCCTGGCTTCCCACCGCTTCACTATCT
TAACAAGGGCGTTTTGCCAATGGAACAGTCTGGCGGCGGCGGCGGGGCCG
GGGGTGGAGAAGCCTACGCGCTTCCCGAAATGCTGCCGGCTCAGCAAAAC
GGTCAGCAGAACGCCGGTCCAGCGAACACCAATGCCAACGAAGGCGGTGC
GGGAGCCAACGGGAGCGGAGGTGTAGCGGTGCGACGGGAGCGAGCGTGGG
AGTGGGATCGGTGGGCGTGACGAGCGGCGGAAGACGGGCACGGACCAGGA
CGCCCCGCACAGACAAGCCACACAGCGACCTGCGCTCTTCAGTGCCTCCA
CTGCCGCCAGACTTCAGCAGAAGAGCCACGTTGCTGCAGCACGAACGCAT
TCCACACGGGACGCACGATCCTTCCGTGCTCGGAGTGCGGCAATGCTTCG
CCAGCA
UFO09042.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:51:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jim-RE | 12379 | CG11352-RE | 1223..2328 | 9..1106 | 5000 | 97.7 | Plus |
| jim-RI | 6193 | CG11352-RI | 1880..2985 | 9..1106 | 5000 | 97.7 | Plus |
| jim-RH | 5620 | CG11352-RH | 1223..2328 | 9..1106 | 5000 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:51:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22800159..22800787 | 1093..471 | 2380 | 96.2 | Minus |
| 3L | 28110227 | 3L | 22800850..22801314 | 473..9 | 2310 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:51:53 has no hits.
UFO09042.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:03 Download gff for
UFO09042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jim-RD | 347..1456 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:12 Download gff for
UFO09042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jim-RH | 1218..2327 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:02 Download gff for
UFO09042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jim-RH | 1218..2327 | 1..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:02 Download gff for
UFO09042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22800145..22800784 | 474..1105 | 96 | <- | Minus |
| 3L | 22800850..22801319 | 1..473 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:12 Download gff for
UFO09042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22793245..22793884 | 474..1105 | 96 | <- | Minus |
| arm_3L | 22793950..22794419 | 1..473 | 99 | | Minus |
