UFO09043.5prime Sequence
1094 bp (1003 high quality bases) assembled on 2011-08-10
> UFO09043.5prime
CAGTCGACATGCTGCGCCAGAACCTGTTGGATCAGCTTAAGCACTTCATA
GAGACGGTGAGCAATGGGCACAGTTGTCCGCAGCTGCTGACCAGCCCCAA
TCTCATCAAGCTCGCACTGGGATTCCTGGAGGAGCTGCCCGCCACGCGAG
ACATTGTGTTCGAATACTTCGCCCTGCTGGCCGAAATCAGTGTGCAGCTG
TATGTGTCGCCGGAGATGGCCGACCCAAAGACCGGTATGCCGGTATCCCA
GGTGAAGCTGGCCGGGAATCGCCAGCAGCAGCAACGTGCTCCGGAATACG
AGGCTTTCAATCTGGTAAAGACCGCGCTGCAGAGTCTGGTGTGGAAGGGA
CCGCCCGCCTGGTCGCCGCTCATCGCCAACTGGAGTCTGGAACTGGTGGC
CAAGCTGTCCGATAAGTACACCCAGCGGCGGATGACCATCACGGCCAGCT
GCAACTATTGGCTGGAGTGCAGCGCCATGCACGGGCTGATGACCCTTATA
AATAGTTGTTTCCGGAAGTTAACCCAACCGGAGGAGGAGGCCTGCGTGGA
GATCATGCTCAATGCCTTTCACCGGTTTCCCATGACCTTCGACTGGATTG
TGGCGAGATTGGGCGGCTGTTTCCCTTACAAGATCATCATGCAGATTCTA
CAGTGCGGCATCAAGCGATTCGTCGATGACTACCGCTGCCACCTGGGACT
CGGAGGCGGGCATCCTCGATTATATGACCTCGTGCCACGAACAGCACCTG
AGGGCCGCCTTTCGTGAGATGCTTAGGGAGGGATTCGCACCGAAGAAGCC
GCTGGACGTGGCCGTCGTTCCTTTCCTGCTGATCACCACCAACTACTCGG
ACACGATCCTGCAGAGCTTGTCAATGTGCTAGTCGAAATCTAATACCGAA
GGACATGTGCGAGTGATAGTGCAGAAGGCGCCGTTGTTGCTGAGCAACAA
ATTGTTTTGCCGGTATGCAGCCCACGCTGAATAATGCCGTGCTGCCCTGA
ACGAGCGTGAGCAACGTTGCCTCCTTACGGCAGCAAATGCCGAGAAGTAT
GTTTGGTGCCAGATTTCTTGGACAATTCCAACGCAGGAGACTTG
UFO09043.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| omd-RC | 3186 | CG9591-RC | 59..1131 | 9..1078 | 4910 | 97.8 | Plus |
| omd-RB | 3334 | CG9591-RB | 59..1131 | 9..1078 | 4910 | 97.8 | Plus |
| omd-RA | 3350 | CG9591-RA | 223..1295 | 9..1078 | 4910 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13682187..13682962 | 891..116 | 3695 | 99 | Minus |
| 3R | 32079331 | 3R | 13683027..13683133 | 115..9 | 535 | 100 | Minus |
| 3R | 32079331 | 3R | 13681942..13682125 | 1078..900 | 445 | 91.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:51:57 has no hits.
UFO09043.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:03 Download gff for
UFO09043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| omd-RA | 216..1295 | 1..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:13 Download gff for
UFO09043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| omd-RA | 216..1295 | 1..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:05 Download gff for
UFO09043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| omd-RA | 216..1295 | 1..1078 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:05 Download gff for
UFO09043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13681942..13682131 | 892..1078 | 91 | <- | Minus |
| 3R | 13682187..13682962 | 116..891 | 98 | <- | Minus |
| 3R | 13683027..13683140 | 1..115 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:13 Download gff for
UFO09043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9507664..9507853 | 892..1078 | 91 | <- | Minus |
| arm_3R | 9507909..9508684 | 116..891 | 98 | <- | Minus |
| arm_3R | 9508749..9508862 | 1..115 | 96 | | Minus |
