Clone UFO09044 Report

Search the DGRC for UFO09044

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:90
Well:44
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptHsc70-2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO09044.5prime Sequence

1109 bp (1007 high quality bases) assembled on 2011-08-10

> UFO09044.5prime
CAGTCGACATGGGTAAAATTCCGGCCATCGGCATCGACTTGGGCACCACC
TACTCCTGTGTGGGAGTTTGGCAGAACAGCAAGGTGGAGATCATCGCCAA
CGATCAGGGAAACCGCACCACGCCCTCCTATGTGGCATTCAACGAGACGG
AGCGCTTGATTGGCGATCCGGCCAAGAACCAGGTGGCCATGAATGCCAAG
AACACGGTTTTCGATGCCAAGCGATTGATTGGACGGAAGTTCGACGACAA
GAAGATACAGGAGGACCTGAAGCTCTGGCCCTTCAAGGTCATCAATGAGA
AGGGAAAGCCGAAGATCGAGGTGGAGTTCAAGGGCGAACGGAAGCGATTT
GCCCCCGAGGAGATCAGTTCGATGGTGCTGACCAAGATGCGCGAAATCGC
CGAGGTCTATCTGGGTGGCAAGGTGAAGGACGCGGTGGTCACAGTGCCGG
CCTACTTCAATGATAGCCAGCGTCAGGCGACCAAGGATGCGGGCTCCATT
GCTGGACTGAATGTGCTGAGGATCATCAATGAGCCCACTGCGGCAGCTCT
GGCCTATGGGCTGGATAAGAATCTTAAGGGAGAGCGTAATGTGCTCATCT
TCGACTTGGGCGGCGGCACCTTCGACGTCTCCGTACTGAGCATCGATGAG
GGTTCCCTGTTCGAGGTGAAGGCCACGGCCGGCGATACCCATTTGGGTGG
TGAGGATTTCGACAACCGGTTGGTAAATCATTTTGCCGAGGAATTCAAGC
GGAAGCACAAGTCGGACATCAAGGGAAATGCCAGAGCGCTGAGACGCCTG
AGAACGGCTTGTGAACGGGCGAAGAGGACGTTGTCCTCCAGCACGGAGGC
ATCCTTGGAGATTGATGCCCTGCACGAGGGCATTGACTTTTACTCGAAAA
TTTCGAGAGCGCGTTTCGAGGAGCTGACATGGACCTCTTCCGGTCCACCA
TGCAGCCCGTGGAGCGGGCACTGAGCGATGCAGATGGAACAAGAAGCCAT
TCATGATGTGGTCCTGGTGGGCGGCTCCCCGCGTATTCCAAGAATCAGAA
CTACTGCAGATCTGTTGGGTGCAGCAGCCTTATCTCAATCAATCCGGATG
AGGCGGTGG

UFO09044.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70-2-RA 2174 CG7756-RA 197..1307 9..1109 5100 97.8 Plus
Hsp68-RA 2231 CG5436-RA 213..1087 24..898 1300 77 Plus
Hsc70-4-RG 2336 CG4264-RG 112..831 39..761 1115 77.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13045581..13046444 179..1039 4055 98.5 Plus
3R 32079331 3R 11955325..11956290 981..17 1375 76.4 Minus
3R 32079331 3R 11958788..11959753 17..981 1375 76.4 Plus
3R 32079331 3R 24056224..24057098 898..24 1300 76.6 Minus
3R 32079331 3R 12466814..12467558 761..17 1250 77.9 Minus
3R 32079331 3R 12502751..12503495 17..761 1250 77.9 Plus
3R 32079331 3R 12506034..12506778 17..761 1250 77.9 Plus
3R 32079331 3R 12509317..12510061 17..761 1250 77.9 Plus
3R 32079331 3R 15244390..15245109 39..761 1090 77 Plus
3R 32079331 3R 13044955..13045131 9..185 870 99.4 Plus
3L 28110227 3L 13975916..13976424 213..724 605 75 Plus
3L 28110227 3L 13974607..13974768 45..206 420 84 Plus
X 23542271 X 11803808..11804430 712..87 400 73.1 Minus
Blast to na_te.dros performed on 2014-11-26 23:52:01 has no hits.

UFO09044.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:04 Download gff for UFO09044.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70-2-RA 189..1307 1..1109 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:15 Download gff for UFO09044.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70-2-RA 189..1307 1..1109 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:06 Download gff for UFO09044.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70-2-RA 189..1307 1..1109 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:06 Download gff for UFO09044.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13044947..13045128 1..182 97 -> Plus
3R 13045585..13046521 183..1109 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:15 Download gff for UFO09044.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8870669..8870850 1..182 97 -> Plus
arm_3R 8871307..8872243 183..1109 97   Plus