UFO09046.5prime Sequence
1127 bp (1017 high quality bases) assembled on 2011-08-10
> UFO09046.5prime
CAGTCGACATGACTATGGAGGATCGCAATCGCATCTGGACCACGGGCAAC
ATTAACCATGGCTTCTTTGGCGACAATCTGCAGCAGCAGCCGTTGCCCCT
GCAGAGATTGCAGACACCAGGTAACCTCAGCCTTCTTTCGGCACCGATTC
GAGCCAATGGCAGTGGCAATGGAAACGCAACTGCCAATGGACATGGACAG
AATTCGGCCACGGAGAGTGCGAATGGAAAGCAGCTGCCATACGAGCCCAT
ATCCCCAAACCTAATTGGCATACAATCCAAGTTTCGTCGGAGTTATTACC
ACAAAGTGGTGCTTGGCGGACTGCTGGCCCTTGTAATTATTCTGCTGATA
GCAATCATAGTCATAAGCCTAGGCCTTAAGAAATCCAGCTCAATTTGCCG
TAGCAAGGAGTGCCTCCGCACAGCGGCCAGCCTCATCTATGCGATGGACG
AGCAGACTGATCCCTGCGAGGACTTTTACCAATTCACCTGCGGCAGGTGG
GCCAACGAGCATCCGCGTCCGGATTCGGTGACCTCGAACGATTGGTTCCG
GGAGCGTCAGGCGCACATAATGCGTGTGGTCCGCGAGTTCCTCCGCTCGA
ATATTACCAAATCGGAACCAGAAGCAGTGGGCAAGGCAAAGACTATGTAC
AGAGCCTGCATGGATACGAAGCTGCTGGATAAGCGTGATCTGGAGCCGCT
GATAAACTATCTGCTGCGTTTTGGACTACCCGTTCTGCCCTCCGCCTTGA
ATCTCACCCTGGGAAGTGGTTCCAAATATGCCACAGAGGCAGCCAATGTC
AAATACAACTGGCTGCAGTCCATTGTTTCCATTAAACAACACCTCACCAT
GGACCTCATCATAGGATTCGATGTCTTTCCCGGATCCTTTCAACCGCACC
ATCAACCGCATTGCCCTGAGAACTCCAGAGACTGATTCGGCGTTCCTTTC
ACACGACGACTCCACAAAATGCTCCGTAGATCATCGCAGACCATTTTTAT
GCAAACAGCGATGATGAGACGACGCGAGATGACCGGGAAGAGCGAGAAGA
GAGCAGCAGCAAACTAACCCGGCATGACCGCTATCTGCATTACGTCGGAA
GGATCGACGATCGGCTCTACGTGATCG
UFO09046.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nep5-RF | 3946 | CG6265-RF | 806..1912 | 6..1096 | 4890 | 97.2 | Plus |
| Nep5-RE | 3470 | CG6265-RE | 385..1491 | 6..1096 | 4890 | 97.2 | Plus |
| Nep5-RD | 3366 | CG6265-RD | 385..1491 | 6..1096 | 4890 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:51:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27060609..27061176 | 944..376 | 2705 | 98.8 | Minus |
| 3R | 32079331 | 3R | 27061397..27061561 | 282..118 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 27063277..27063394 | 123..6 | 590 | 100 | Minus |
| 3R | 32079331 | 3R | 27061241..27061335 | 375..281 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:51:17 has no hits.
UFO09046.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:58 Download gff for
UFO09046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep5-RC | 382..1404 | 1..1018 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:53 Download gff for
UFO09046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep5-RC | 382..1404 | 1..1018 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:47 Download gff for
UFO09046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep5-RD | 382..1404 | 1..1018 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:47 Download gff for
UFO09046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27063280..27063397 | 1..120 | 98 | | Minus |
| 3R | 27060603..27061176 | 376..949 | 98 | <- | Minus |
| 3R | 27061241..27061335 | 281..375 | 100 | <- | Minus |
| 3R | 27061399..27061558 | 121..280 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:53 Download gff for
UFO09046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22889002..22889119 | 1..120 | 98 | | Minus |
| arm_3R | 22886325..22886898 | 376..949 | 98 | <- | Minus |
| arm_3R | 22886963..22887057 | 281..375 | 100 | <- | Minus |
| arm_3R | 22887121..22887280 | 121..280 | 100 | <- | Minus |
