UFO09048.5prime Sequence
1130 bp (1022 high quality bases) assembled on 2011-08-10
> UFO09048.5prime
CAGTCGACATGAGTCGTAATCAAAACGAAAGCAACCTCCTTGATATCAAT
GAAGATCTGCCTTTTGCTCTTGCTCTGCCCCCCGTCTCAATGGATTCGTT
GCAGCTGAACGCAGACGGCAATAGCCCCGAGGACAAGACGCTCGGTATTG
GCCGTAAAACCATTTTGAATGCGCACACAAAATCTTTGGCTCCCATTGTG
AGTGACGAGGCCCTGAACACGCTAAATGAGCTCCGCGAGCAAAATCTTCT
CTGCGACGCCCAGATTTCTGTGGGGGAGGATGTGTTCAATGTACATCGTG
CAATAATGTGTTCATGTAGCTCATACTTTCGAGCTCAATTCACAGGGTTT
AACGCTGACACTCCCGGATGTGTAGATGGGTCAGATGCAAAAAAAAACAA
TAATTTTATTCATATCCCCGGCGTGAGTTCATGTATAATGAACTGTGTAA
TACAGTACGCTTACCTGCGTCAAACAAACATCTCCGAGAGCAATGTTCAT
GAGTTACTTATCTGCGCTGACTACGTTGGCATGGTAGGTTTAGTTAAGAA
ATGTAAAGACTACCTCGGTCGCATACTCACCCCCGAAAACTGTGTCAGTA
TTATGGGATTCGCACGGTTCCGATTTTTGGAGGACCTTCACCTGAAGGCC
AGGAACTACACTCTAAGGTACTTTACTGAAGTTGCATATCGTAATATTGA
CATACTAGATATGTCAGCTGAAGACTTTTACAGTATTATTAGCGATGATG
AGTTAAATACCCGCGAAGAGGATCACGTATGGAAATTGTGTGTTAAATGG
ATCGACCGTAATCCAGAAAGCCGCAAGCGCCATGTTGCCCATCTAATGAC
TGGGGTACGACTGGGCCTAATGACTCCAAAGTGCTTCATGGAAGAGGTTA
AGGAACACCCATACGTCTTAGAATGTGAAGCCGCTAAGCCACTGATCGTT
GACACCTTTAAATTTATGTACGACCTGGACTTTTTGATCCTCAGCAGACG
AGCTTACCACTCCACCACTGGCATGCAGCTACCGCCACGAGTCATCTTTG
CATAGCGGCTGGAGCGGGGGCACCTCAGAGTGCATCGAACTTATGACCGA
GGCGATATGGTACATTACCGAAGATCTGCT
UFO09048.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:51:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| klhl10-RB | 2779 | CG12423-RB | 156..1262 | 9..1102 | 5140 | 98.4 | Plus |
| klhl10-RA | 2706 | CG12423-RA | 181..1287 | 9..1102 | 5140 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:51:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U | 3151297 | U | 143312..143634 | 9..331 | 1600 | 99.7 | Plus |
| U | 3151297 | U | 143686..143973 | 331..618 | 1440 | 100 | Plus |
| U | 3151297 | U | 144025..144290 | 616..881 | 1330 | 100 | Plus |
| U | 3151297 | U | 793600..793707 | 987..880 | 540 | 100 | Minus |
| U | 3151297 | U | 170084..170191 | 880..987 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:51:25 has no hits.
UFO09048.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:59 Download gff for
UFO09048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| klhl10-RB | 150..1246 | 1..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:56 Download gff for
UFO09048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| klhl10-RA | 175..1271 | 1..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:51 Download gff for
UFO09048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| klhl10-RA | 175..1271 | 1..1088 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:51 Download gff for
UFO09048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U | 143306..143634 | 1..331 | 98 | -> | Plus |
| U | 143687..143971 | 332..616 | 100 | -> | Plus |
| U | 144026..144290 | 617..881 | 100 | -> | Plus |
| U | 170086..170208 | 882..1002 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:56 Download gff for
UFO09048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ArmU | 1910292..1910620 | 1..331 | 98 | -> | Plus |
| ArmU | 1910673..1910957 | 332..616 | 100 | -> | Plus |
| ArmU | 1911012..1911276 | 617..881 | 100 | -> | Plus |
| ArmU | 1937072..1937194 | 882..1002 | 98 | -> | Plus |
