UFO09052.5prime Sequence
1129 bp (1020 high quality bases) assembled on 2011-08-10
> UFO09052.5prime
CAGTCGACATGAAGAGGCAGTTTGCCAAAATCAAAATAGCAGCCGAAAAT
CTGTCAAGATCGAGCAAGTCGGACAGCAAGGACTCGGAGCTGGAGGCGAT
CGAGCGGCAGGTGGACAGATATCGGGACACCATCGAGAAGATTGTCCGCA
AGCTGCCGGCGCTGAGCGGCGGAGGCGGAAGTGGAAGCGGGAGCAGCGAG
GAGCAGGACAAGCGGACCAAGAAGAACAGTCACTACAAGATTGCCCAGGC
TCTGGACGAGTCCGCCAAGGAGCTGCCCAAGGACATGCCGCTGCAGAAGG
TCCTCGCCAATTGCGGCGAGCTGGAGAAGACGATGGCCGAGTGCATCATC
GAAAGCGAGCTGGAGACGGAGGCCAAGGTGGTGCGGCGGCTGAAGAACAT
CTTGGACAAGGAGATACAGGAGATCTCCACGCTCAAGCGCAACGTGTCGC
GCACCCTGCAGGAGTATACCTCGCTGAAGCGCAGCCATGAGGCGGCAATC
CGTCTGGAGGAACCAGCGGCCAAGGTTAACCACATCAAGAGCCAGCAGGA
GGAGTGCGAGCTGAAGCTGGAAAAGGAGCGGGATGCCTGGGCGGCCCAGA
TGCTGGAGCTGATTGCCAAAGAGGACGAGATCGTTAGCTGCATCCGCGAC
TATGTACTCAACCAAAGAAACTATCACGAGCGCGCCCTGCAGCACGTAAA
CGCCTCGCTGGCCCGCATCCAGGACACTATCCAGGGCACAGAGAAGTCCC
GCTTTGGCACCTCGCTCAAGGAGCATCTGACATCCACAAACCGCGAGATC
TCCTACATAGTGGAGCTGTGCTGCTGCTGTCTGTTAGAGCACGGCCTGGA
GGAAGAGGGTCTGCTGCGAGTGGGCTGCGCGAGCACGAAACTGCGGCGTA
TGAAGCACGCCCTGGAGCGCAGCATGTAAGACACCGCTTCCGCTGGACTA
CCAGGATCCACATGTCATTGGTTCATACTCAAGCTTGTACTTGCGTGAGC
TGCCCGAGCGCTGCTCACTTACCACCTGTACAGGGACTTCATCCGGATCG
CTGAAAGGGCAAGCGGAGGCCGAGCGCAAGTACAGAGATTTAGGGCCATT
TCGGACCAGCCTGCCAGAGAATTAACATT
UFO09052.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP92B-RE | 3558 | CG4755-RE | 148..1254 | 9..1116 | 5155 | 98.2 | Plus |
| RhoGAP92B-RB | 3013 | CG4755-RB | 148..1254 | 9..1116 | 5155 | 98.2 | Plus |
| RhoGAP92B-RA | 3016 | CG4755-RA | 148..1254 | 9..1116 | 5155 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:52:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19910891..19911496 | 490..1094 | 2590 | 97.7 | Plus |
| 3R | 32079331 | 3R | 19905629..19905888 | 57..316 | 1270 | 99.2 | Plus |
| 3R | 32079331 | 3R | 19908433..19908610 | 315..492 | 890 | 100 | Plus |
| 3R | 32079331 | 3R | 19905311..19905360 | 9..58 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:52:26 has no hits.
UFO09052.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:08 Download gff for
UFO09052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP92B-RA | 165..1279 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:28 Download gff for
UFO09052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP92B-RA | 165..1279 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:16 Download gff for
UFO09052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP92B-RA | 140..1254 | 1..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:16 Download gff for
UFO09052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19905303..19905360 | 1..58 | 94 | -> | Plus |
| 3R | 19905631..19905887 | 59..315 | 99 | -> | Plus |
| 3R | 19908434..19908609 | 316..491 | 100 | -> | Plus |
| 3R | 19910893..19911516 | 492..1116 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:28 Download gff for
UFO09052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15731025..15731082 | 1..58 | 94 | -> | Plus |
| arm_3R | 15731353..15731609 | 59..315 | 99 | -> | Plus |
| arm_3R | 15734156..15734331 | 316..491 | 100 | -> | Plus |
| arm_3R | 15736615..15737238 | 492..1116 | 97 | | Plus |
