UFO09053.5prime Sequence
1121 bp (1015 high quality bases) assembled on 2011-08-10
> UFO09053.5prime
CAGTCGACATGTTTTCGGCGGTGAAGCCGCTCTCCAAGTATCTCCAGTTC
AAGTCAATACGCATCTACGATTCCGTCTTCACCATCCACTCCAGGTGCAC
CGTCGTCATCCTGCTCACCTGCTCGCTTCTCCTGTCCGCGCGTCAGTACT
TTGGGGATCCGATCCAGTGCATCAGCGAGGAGAAGAACATCGAGTACATA
CAGTCCTACTGCTGGACCATGGGCACCTACATCCTCAAGCTGGACGACTT
CGGCGATCAGGAGCAGGCGCTGGTTTCCCCAAATCAGGAAGTCTCCTACA
ACTCTGCCTTCTTCTCATCCGCCACAACCAACGCACCGCAGTCATCGTCG
AGGGTCCGCACCAGGCCCCACTTCAGATCGAGTCTGCGCAGGATTGGCGA
GTACAACGAGGCCTACGCGCGGTCCCTGTCGATAGCCGAGGGCGTGGGCC
CCGAGATTCGTGGCCAGACGGAGCGGCAGTATCTGCGCTACTACCAGTGG
GTCATCATCCTGCTGCTCTTCCAGTCGTTCGTCTTCTACTTCCCCTCGTG
CCTGTGGAAGGTGTGGGAGGGCCGGCGGCTTAAGCAGCTCTGCTCGGAGG
TCGGCGACGCGCTCCTCTCGGAGGAGACCTACAATACCCGGCTGCGCATG
CTGGTCAAGTACTTCACCACCGACTACGAGGACATGCACTTTTGCTACAT
GGCCAAGTACGTCTTCTGCGAGGTCCTCAATTTCCTCATCAGTGTGGTGA
ACATAATCGTGTTGGAAGTGTTCCTGAACGGATTCTGGTCGAAGTATCTG
CGCGCGCTGGCCACCATTCCGTTCTACGACTGGGATCGCTGGAACCGCGT
GTCCTCGAGCGTCTTCCCGAAGATCGCCAAGTGCGAGGTGCTCAAGTTCG
GGGGCAGCGGCACGGCGAACGTTATGGACACCTGTGCATCCTGCCGCTGA
CATTCTGAACGAGAATCTTCGTCTTCCTTTGGGCGTGTCTGCTCATGGCC
TGATGTCCGGTTTGACTTCTGTGCGCTGCATGATTGCAGCAGTATCTCCG
AGAGCAATGATCGCAGCCAGTGGTCATGACCAACGGCCATGTGAGATCCT
GCGGTACCTGACATCGCCACT
UFO09053.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:52:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Inx5-RB | 1814 | CG7537-RB | 340..1447 | 9..1094 | 5010 | 97.7 | Plus |
| Inx6-RA | 1875 | CG17063-RA | 621..1174 | 414..965 | 620 | 74.6 | Plus |
| Inx6-RA | 1875 | CG17063-RA | 285..496 | 24..235 | 325 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:52:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19169807..19170544 | 746..9 | 3690 | 100 | Minus |
| X | 23542271 | X | 19169237..19169516 | 1015..744 | 1090 | 96.8 | Minus |
| X | 23542271 | X | 20268817..20269149 | 746..414 | 480 | 76.3 | Minus |
| X | 23542271 | X | 20269274..20269485 | 235..24 | 325 | 76.9 | Minus |
| X | 23542271 | X | 20268538..20268706 | 950..783 | 195 | 75.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:52:30 has no hits.
UFO09053.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:09 Download gff for
UFO09053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inx5-RB | 91..1179 | 1..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:30 Download gff for
UFO09053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inx5-RB | 332..1420 | 1..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:18 Download gff for
UFO09053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inx5-RB | 332..1420 | 1..1071 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:18 Download gff for
UFO09053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19169171..19169516 | 744..1071 | 94 | <- | Minus |
| X | 19169810..19170552 | 1..743 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:30 Download gff for
UFO09053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19063204..19063549 | 744..1071 | 94 | <- | Minus |
| arm_X | 19063843..19064585 | 1..743 | 99 | | Minus |
