UFO09054.5prime Sequence
1110 bp (1004 high quality bases) assembled on 2011-08-10
> UFO09054.5prime
CAGTCGACATGGCGAATAATCAGCCCCCGACAACGAATGCTACGCGTAAA
GATAAGCGCATAGAGCGGGACGAGAACCGTGGCCAATGGAAGAGCAAGTC
GGAGTTTATCCTCTCGCTCCTTGGATATGCCATTGGCATTGGCAATGTGT
GGCGATTTCCCTATCTCTGCTACCGCAGTGGCGGCGCCGCCTTTCTGATT
CCCTACCTATTGATGGTAATTTTAGCCGGCATACCCCTGTTTTATATGGA
AATTCTGATCGGTCAGTTCTCGAGCACCGGATGCACTGGCATGTTTCGCA
TGACGCCTCTGCTGAAGGGAACGGGAATCGCTCAGGTGGTGGTCAATGCC
TACTGCGTGTGCTACTACTCGGTGATCATATCGTATCCCATTCGGATGAT
CTTCTACTGTTTCTTCAAGAAGGTGCCCTGGGAGGACTGTTCCAATTCAT
GGAATACCGACGACTGTGTAACCGCGTCTGACATGGGAAAGCAAAATAGT
AGTGATGTGTTCAAAACTTCCGCCGATGAATTCTTCCACTTGGAAGTACT
TAGAATCTCAACAGACATCTCCGACTTGGGTGGCATGGTATGGGAACAAT
TAACTGCCTTGATTATCACATGGATTATTATTTACTTCTGCCTAATGCGA
GGAATTAAGTCGGTTGGCAAGGTTGTGTACTTTACAGTCCCCTTCCCTTA
CTTGCTGCTCTTCATTCTGCTCATCAGAGGAGCCACTTTGCCTGGAGCCT
GGAAAGGCATAAAGTTCTACCTGTATCCGGAGTGGCACCGCTTGCTGGAC
CTCAAGTCTGGGCCGATGCCGCCGTCCAGATGTTCTTTGGCATTGGTCCC
GGCTGGGGTGGTATCGTCAACATGGCCAGTTTCAGTAGCTTTCGAAATAA
CGCCAAGTGCGACTCGGTTCTCATAGTATCGATCAATGTGTTCACAGCTT
ATTGGCCGGATTGTGTCTCTCCGTGTTGGGTTTCCCTCTGAAAATCGGGC
ATACCGGTGAATCGGTGCACTGAGACTGGACTGGCCTCCGTCCGTATCCG
GAGGCCATGCTGCTGCTGTCCGCAGCTCTGGGGCCTAGTTTTCTTAGCCT
TTTTGCGACT
UFO09054.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:52:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ntl-RA | 2069 | CG7075-RA | 147..1239 | 9..1082 | 4890 | 97.5 | Plus |
| Ntl-RB | 1860 | CG7075-RB | 116..1030 | 187..1082 | 4000 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:52:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7711831..7712127 | 186..482 | 1470 | 99.7 | Plus |
| 2L | 23513712 | 2L | 7712482..7712784 | 662..962 | 1370 | 98.3 | Plus |
| 2L | 23513712 | 2L | 7711026..7711203 | 9..186 | 890 | 100 | Plus |
| 2L | 23513712 | 2L | 7712304..7712429 | 539..664 | 630 | 100 | Plus |
| 2L | 23513712 | 2L | 7712183..7712238 | 483..538 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:52:35 has no hits.
UFO09054.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:09 Download gff for
UFO09054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ntl-RA | 1..1111 | 3..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:33 Download gff for
UFO09054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ntl-RA | 139..1251 | 1..1092 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:21 Download gff for
UFO09054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ntl-RA | 139..1251 | 1..1092 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:21 Download gff for
UFO09054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7711832..7712127 | 187..482 | 99 | -> | Plus |
| 2L | 7712183..7712238 | 483..538 | 100 | -> | Plus |
| 2L | 7712304..7712427 | 539..662 | 100 | -> | Plus |
| 2L | 7712483..7712816 | 663..990 | 97 | -> | Plus |
| 2L | 7711018..7711203 | 1..186 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:33 Download gff for
UFO09054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7711018..7711203 | 1..186 | 98 | -> | Plus |
| arm_2L | 7711832..7712127 | 187..482 | 99 | -> | Plus |
| arm_2L | 7712183..7712238 | 483..538 | 100 | -> | Plus |
| arm_2L | 7712304..7712427 | 539..662 | 100 | -> | Plus |
| arm_2L | 7712483..7712816 | 663..990 | 97 | -> | Plus |
