UFO09055.5prime Sequence
1141 bp (1039 high quality bases) assembled on 2011-08-10
> UFO09055.5prime
CAGTCGACATGTTTCTGCCCGTGAAATCCAATCATTCCGGCGAGGCGAGT
GGCAACAACGAAGATGTCACCACCACCAGCAACAATTCCACACAGACGCC
CAGCGATCTGAGCCCACCGGGACCCAATGAAGAGGTACTGCCCCAGGCGC
ATCACCAGAATCCGGGCCACTGCATCGCCTCCTTTGCAGCCATCAACCAG
ATGAGGAACAATGCGCAGCTATGCGATGTGCGCCTGGAAGTGGGCGGCGA
CACCATCAATGCCCATCGAGTGGTTCTGGCCTCCGTATCGCCCTATTTCT
ATGCGATGTTCAACGACGACATGCTGGAGCGCACTCAGGGATTAGTTCGG
CTGCATGACGTGGACAGCTCGGCGCTGCGGCAGCTGATCGATTACACCTA
CACCGGCGAGATCACGATCACCGAGCAGAACGTACAGGTGCTGCTGCCCG
CGTCCGGACTACTGCAGATGCACTCGGTGCGGGATGCCTGCTGTAAGTTC
CTGCTGCGCCAGCTGCATCCCTCCAACTGCTTGGGCATACGCAGCTTCGC
AGATGCCCACTCCTGCAAGGAGCTGCACACGCGGTCGCATAAGTACGCCC
TGCAGAACTTCCAGCAGGTTGTGGGTACCGAGGAGTTCCTGCTGCTGCCG
TTCGAGGAGGTTCGCGAGCTGATCTCCAACAGCCAGCTGAACATCAGCTC
CGAGGAGCGAGTCTTTGCCGCCGTCATCAATTGGGTGAAACATGATCTGC
CCACACGAAGACTCCACATTGCCGAGTTGATGTCAAACGTCAGACTGCCG
CTGGTGAGCAGGGATTTCCTCATGAGCTGCGTGGAAACGGAGACCCTCAT
GCGCGATGACTCCGAGTGCAAGGAGCTGCTGCTGGAAGCCATGAAGTACC
ATTTGCTTCCGGAGCAGCGCAGCATAATGGGCAGCCAGCGAACCCAGGAG
CGTCGTCCGGAGGGCATGAAACCCTACGTATTTGCGGTGGGGAGGAGGCA
GTCTCTTCGCCATTCACAACGGAGTGGCGAGGTGTACATCCGGCGCTCTA
CTCTGGGAGTCAGTGCCCATGTTGGGGGGCGGACGATTCTCGGATCGGAG
TACATCTTGCCAAAGCAGTGTTATGTGGTCGGGGCTACATG
UFO09055.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:52:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15097-RE | 3029 | CG15097-RE | 397..1534 | 2..1138 | 5035 | 96.9 | Plus |
| CG15097-RD | 3029 | CG15097-RD | 397..1534 | 2..1138 | 5035 | 96.9 | Plus |
| CG15097-RC | 3029 | CG15097-RC | 397..1534 | 2..1138 | 5035 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:52:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18823865..18824570 | 1021..315 | 3380 | 98.9 | Minus |
| 2R | 25286936 | 2R | 18825497..18825680 | 218..35 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 18824704..18824803 | 315..216 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:52:39 has no hits.
UFO09055.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:10 Download gff for
UFO09055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RC | 372..1435 | 1..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:35 Download gff for
UFO09055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RC | 396..1459 | 1..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:23 Download gff for
UFO09055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RC | 396..1459 | 1..1065 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:23 Download gff for
UFO09055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18823821..18824569 | 316..1065 | 98 | <- | Minus |
| 2R | 18824704..18824800 | 219..315 | 100 | <- | Minus |
| 2R | 18825497..18825680 | 35..218 | 100 | <- | Minus |
| 2R | 18826019..18826051 | 1..34 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:35 Download gff for
UFO09055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14711326..14712074 | 316..1065 | 98 | <- | Minus |
| arm_2R | 14712209..14712305 | 219..315 | 100 | <- | Minus |
| arm_2R | 14713002..14713185 | 35..218 | 100 | <- | Minus |
| arm_2R | 14713524..14713556 | 1..34 | 91 | | Minus |
