UFO09056.5prime Sequence
1130 bp (1051 high quality bases) assembled on 2011-08-10
> UFO09056.5prime
CAGTCGACATGGAGAAGAGCACACTGAAGATCAATAATGAGGACCGGCAG
AATTTTGTGGCCACGCGGATGAGTCTGCCGCTCTTTATGGTGTCCCGCAA
TCGTATTAGAAAGGAAAATTTACCGCGAGTGGAGAAGCAATTTAAGTTGG
CCGGTCAGCATTACAATGAGTTCTGCCAGAAGGAAAACAGACGAGAGGCC
TTCAGCAAAGCCACCTTTGATCACTACCGCCACATTACGGGTTTCGACAA
GACGCCAAAGAATCCGTATCCGGAACGTCGAAGGCTACACATCGATCGGA
GTATGACCAAATGGAGGGGCTGGCAACTGCCCCCAAATCATTACGGAGTG
CCCCCGGAACCGTATCTCCGACTGAAGGGCACCAAGGGCTCCGTATTCGC
CAAGCCGCACACGAATCATAGTCGCGTCTCCATTAAACCACCGCCATATC
ATTTTTACGAACTTCCGGCGGAAATCGAGAGGCTCTTCAAGCGCCCGAAC
TTGCAAAAGGGTATCTTCCTTTCAAATGCCCGCGATCGTCGACCGACCAC
ACACGCTATGATTTCCAATCTGTCTGGCTGCTGGCGTAATCCCAAGGATG
CCGGTCCCTGCGACACCCATACAAACATCTTTGAGTTGGCCGCAAATGCT
GTACCCGTCACAAAGGCGCCACGCCCTAATCCGCACCTGTTTCTGCGCCA
CTCCTGTGTGCCCACCAAGCCCAATCGACTGATCCGACGCCATATCAGCA
TGGAACCGGCTCCAGGTCGCTACTGCACCAGTTATCCGAACGTGTGTCCC
TGTCCGTCTGGTAAGACCAGTGTGCCGGGACTACAGCTGATGATTGATGA
CCAGAAGCGCCTGAAGTTTCGCCGCCTGCCATTTGAAAGGATCAGTCGAA
AGCGACTCTGTGAGCCGGATTGGCGCCATGTCGAGGGCCAAGGCCATCGT
CATGTCTTCCTAATGGGACGCAAAGATAGACCCAGCCCACCAAGATCCCA
CTTCTTCCAAAAAGCAGGCAAGCCGATAAGCATGTTATGCCGAATTCCAA
GTACATACATGCCTGGAGCAAGCCGCAGCGAAATTCATTCATTCGGGCCG
TATTCGGTTCCTCGGTACGGCAGAATCCTT
UFO09056.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:52:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13870-RA | 1811 | CG13870-RA | 64..1179 | 7..1119 | 5165 | 98 | Plus |
| CG13870-RB | 1921 | CG13870-RB | 210..1149 | 183..1119 | 4300 | 97.8 | Plus |
| CG13870-RB | 1921 | CG13870-RB | 64..210 | 7..153 | 720 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:52:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20344650..20345181 | 526..1056 | 2375 | 98.5 | Plus |
| 2R | 25286936 | 2R | 20344195..20344537 | 183..525 | 1715 | 100 | Plus |
| 2R | 25286936 | 2R | 20343908..20343998 | 7..97 | 440 | 98.9 | Plus |
| 2R | 25286936 | 2R | 20344056..20344142 | 97..183 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:52:44 has no hits.
UFO09056.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:11 Download gff for
UFO09056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13870-RA | 58..1139 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:38 Download gff for
UFO09056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13870-RA | 58..1139 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:24 Download gff for
UFO09056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13870-RA | 58..1139 | 1..1081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:24 Download gff for
UFO09056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20343902..20343997 | 1..96 | 95 | -> | Plus |
| 2R | 20344056..20344142 | 97..183 | 100 | -> | Plus |
| 2R | 20344196..20344537 | 184..525 | 100 | -> | Plus |
| 2R | 20344650..20345206 | 526..1081 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:38 Download gff for
UFO09056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16231407..16231502 | 1..96 | 95 | -> | Plus |
| arm_2R | 16231561..16231647 | 97..183 | 100 | -> | Plus |
| arm_2R | 16231701..16232042 | 184..525 | 100 | -> | Plus |
| arm_2R | 16232155..16232711 | 526..1081 | 97 | | Plus |
