UFO09057.5prime Sequence
1106 bp (1028 high quality bases) assembled on 2011-08-10
> UFO09057.5prime
CAGTCGACATGGAACCAGGAACCATTCCATCGCCTGTTTCAGCACCAGTT
GCTGCGCCTGTGACGCCATCAGCAGTGGCTGCCCCTGTCCAAGTAGTAAG
TCCTGCGGCAGTGGCTCCCGCACCAGCGGCACCGATTGCAGTCACTCCAG
TTGCTCCACCGCCCACCCTTGCAAGTGTGCAACCGGCAACAGTTACTATT
CCAGCTCCAGCTCCAATTGCTGCCGCATCCGTCGCTCCTGTCGCATCTGT
GGCGCCTCCAGTTGTTGCAGCTCCAACTCCGCCGGCAGCAAGTCCAGTTT
CAACACCACCCGTTGCTGTTGCTCAGATTCCGGTCGCTGTTTCAGCACCA
GTGGCACCTCCCGTTGCTGCAACACCCACTCCTGTTGCCCCAATTCCTGT
AGCTGCGCCTGTGATAGCGACACCACCTGTTGCTGCCTCTGCCCCCACTC
CGGCTGCCGTGACTCCCGTTGTTTCGCCTGTGATCGCCACACCACCTGTG
GTTCCCGCTAACACCACGGTTCCCGTTGCAGCACCTGTAGCTGCTGTACC
AGCTGCTGTTCCTGTTGTTGCCCCAGTTCTTGCGCCTGCCGTTGCTCCTG
CAGTTGCCCCCGTCGTCGCCGAGACTCCAGCTCCACCACCTGTTGCTGAG
ATTCCGGTTGCAACCATACCGGAGTGCGTTGCACCTCTCATCCCCGAGGT
TTCCGTCGTGGCAACGAAACCACTAGCTGCAGCTGAGCCAGTGGTCGTTG
CTCCACCGGCTACTGAAACCCCAGTCGTTGCTCCGGCTGCAGCTTCCCCC
CATGTGTCGGTTGCACCAGCTGTGGAGACCGCAGTGGTCGCTCCTGTAAG
TGCTTCGACTGAGCCCCGGTAGCTGCTGCGACTCTAACACTGCACCAGAA
ACGCCAGCCCTTGCTCCAGTCGTTGCCGAGTCCCAAGTTGCTGCGATACT
GTTGTAGCTACACCCTCCTACTCAGCCCAGAGCAGAAACCATTGCACCAC
CTGTTGTTGCAGAAACCCAAAGTTGCTCAGTGCTGTTTGGCTGAGAAACA
CCACCGTTGTACTCTGGTGGCGCAGATCAATACCGGGCCAGTCGTGCCAC
GACCAG
UFO09057.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:52:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpn-RA | 2787 | CG4795-RA | 187..1298 | 6..1103 | 5040 | 97.9 | Plus |
| Cpn-RB | 2853 | CG4795-RB | 187..1298 | 6..1103 | 5040 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:52:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12164536..12165553 | 1018..6 | 4750 | 99.1 | Minus |
Blast to na_te.dros performed 2014-11-26 23:52:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6893 | 473..312 | 154 | 57 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6893 | 365..192 | 150 | 54 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6919 | 405..217 | 146 | 54 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6899 | 370..204 | 144 | 55.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..3002 | 606..379 | 136 | 55.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2661 | 600..525 | 132 | 68.4 | Minus |
UFO09057.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:11 Download gff for
UFO09057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpn-RA | 183..1227 | 1..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:39 Download gff for
UFO09057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpn-RB | 183..1227 | 1..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:25 Download gff for
UFO09057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpn-RB | 183..1227 | 1..1037 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:25 Download gff for
UFO09057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12164513..12165556 | 1..1037 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:39 Download gff for
UFO09057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7990235..7991278 | 1..1037 | 98 | | Minus |
