UFO09058.5prime Sequence
1151 bp (1030 high quality bases) assembled on 2011-08-10
> UFO09058.5prime
CAGTCGACATGTTGAAGTTGGCGCCGCAGGGCGGCAGATATTATAGCCAA
ATAAGCCGCATTTGCCAGTGGATTTTGCCGAAAATTCAGACGCAGTCGAA
GCCACCAAAACAACAACAACAACAGCAACCACAATTGAAAGAACAACAAC
AACACAGCTACGCAACTTTGGCTGCCAAGATGAAGAAGGAGAAAAAGGAG
AAGCCATCCGGCGGTGGAGATACTCGCAAGGAACTCAGTCCCTTGCCCAA
GTACATCGAGGAGCGCAATGTCTTCTGGGAGAAGTGCAAGGCGGAATACG
AGGCCGAACTGGCGGCCAAGAAGCGTGAGCCCATCAAGGTGACACTGCCC
GATGGCAAGCAGGTGGACGCCACCTCCTGGGAGACCACTCCGTACGAAGT
GGCCCGCGGCATTAGTCAGGGTCTCGCTGACAACACCGTCATCTCCAAGG
TGAACGGCGAGGTGTGGGATTTGGACCGTGTGCTCGAGGGAAACTGCACC
CTGCAGCTTCTCAAGTTCGACGACCCTGAGGCGCAGGCCGTCTTCTGGCA
CAGCTCTGCCCACATCATGGGTGAGGCCATGGAGCGCATCTATGGTGGAC
ACCTGTGCTACGGTCCGCCCATTGAAAACGGCTTCTACTACGACATGCAT
CTGGAGGGCGAGGGTATCTCCACCAACGACTACGGCGCCATGGAGGGTCT
GGTTAAGCAAATTGTCAAGGAGAAGCAGATCTTCGAACGTCTGGAGATGA
AGAAGTCCGACCTGCTGGAGATGTTCAAATACAATGAGTTCAAGGTGCGC
ATTCTCAACGAGAAGGTGACCACCGACCGCACCACTGTCTACAAGTGCGG
GTTCTTTGATCGATCTCTGCCGCGGACCTCATGTTCGTCACACCGGGCAA
GTGAAGGCCCTGAGATCACCAAGAACTCCTCTACCTACTGGGAGGGTTAA
GCTGACGCTGAGACACTGCAACGCGTCTACGGCATCTCGTTCCCCGACCC
GAAGCAGCCTCAAGGAGTGGGGAGAAACTTTCAGTAGGAGGCGGGCTTAG
CGTGATCACCCGCCAATTCGGTCCGCGAGCCAGGGAGCCTGTTTCTTCTT
CATGAAACTTCGCCTGGTCTAGTGCTTTCCAGCCGCGAGGGAGGCGCCTA
A
UFO09058.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:52:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-thr-RD | 2796 | CG5353-RD | 145..1268 | 9..1140 | 5080 | 97.4 | Plus |
| Aats-thr-RA | 2520 | CG5353-RA | 145..1268 | 9..1140 | 5080 | 97.4 | Plus |
| Aats-thr-RB | 2298 | CG5353-RB | 84..1046 | 170..1140 | 4275 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:52:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12104687..12105121 | 231..665 | 2175 | 100 | Plus |
| 2L | 23513712 | 2L | 12105176..12105566 | 666..1060 | 1560 | 96.5 | Plus |
| 2L | 23513712 | 2L | 12103895..12104057 | 9..171 | 815 | 100 | Plus |
| 2L | 23513712 | 2L | 12104491..12104552 | 170..231 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:52:06 has no hits.
UFO09058.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:05 Download gff for
UFO09058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-thr-RA | 101..1157 | 2..1060 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:16 Download gff for
UFO09058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-thr-RA | 136..1192 | 2..1060 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:07 Download gff for
UFO09058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-thr-RA | 136..1192 | 2..1060 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:07 Download gff for
UFO09058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12103886..12104056 | 2..170 | 97 | -> | Plus |
| 2L | 12104492..12104552 | 171..231 | 100 | -> | Plus |
| 2L | 12104688..12105121 | 232..665 | 100 | -> | Plus |
| 2L | 12105176..12105566 | 666..1060 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:16 Download gff for
UFO09058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12103886..12104056 | 2..170 | 97 | -> | Plus |
| arm_2L | 12104492..12104552 | 171..231 | 100 | -> | Plus |
| arm_2L | 12104688..12105121 | 232..665 | 100 | -> | Plus |
| arm_2L | 12105176..12105566 | 666..1060 | 96 | == | Plus |
