UFO09059.5prime Sequence
1126 bp (1047 high quality bases) assembled on 2011-08-10
> UFO09059.5prime
CAGTCGACATGGAACAGGCCGAATTGGGCAGTACGTGCCTTGCAGCGCCT
AAGCGCCGCTTCCCGGACAACGAACGTTGTGGGCGGGAGCTGGCCGCCGT
GCCCGTGCAGCCAGTGCTGCCACAAATCCCTACCGAGGAGGAGCCGGAGA
TAAAACAGCGCAAAAGGGAGAAGGAGCATAAGGAATCCCTCGACCGGGAA
ACGGAGTGCAACCTCATGGACTTCTGTGATGAGCTGCTCTTCGAGATCTT
CCAGTACCTGGACACGTCCTCCATTCTGGCGGTGATGCATTGCTCGCCGC
GCTTTGAAAACCTCCTGCTGGATCACCGCTTCTATCATCACATAGACTTA
AGCAACGGGCCCCTGCCTATGGGCATCCTAGAAGAGATTCTTGGACGAGC
CACCGAAAAGACACACACCATTAAAATCTGCGGACCTCCGTCCTCGCAGC
ATGTTGCAGGCGAATTCCGCCAGTTCACCCAAACGCTAAGCTCCGTTTTC
CCCAGGGTTGTACAGCTTAAAGTGCTGGAGCTGGAGGGCGTCAGCCTGGA
CTTCGAATACATACACATAACTGAGTTCCCGGCCACTCTGAGGCGTCTGA
AGCTAAAGGACTGTAGCGTTAGGGTCGGCGACACGCCAAAAAGCATATTT
TACTCCATAGAGCTGCATCTGCTTGATCTAGAGGATCTCAGTATTGAGGA
CAACAGCTGGTTCGAGCCCTATTATATTATGGGCCTGTCGAAGTTACCTT
CCTTGCGGCGTCTTAGTCTTAAGGGCTGTCAGGCGCTATGCAAGTTTGTG
CCCTATGGCAGCATGGCGGCACGTTTCGGTTTCCAAAAACTAGAGTCACT
AGATCTTCGCCAGACGCCCATCAACAACTCAGATCTGCAGTGTTTTAGCG
CTATCGAGAATCTCAAGGAACTGCTGCTTGAGTCGCCACAGATCCTGCAC
TCCAAACAAGCCGTTGCTAAAAAAATACCAACGGCAACGCCCACTGACGA
AGCTGCTTCCCCGCAGCCTGAATCACTGAAAGTGCTTAGCGATGACGAGC
CGTCCACATCGCGGGCGCCAATGGAGCATTCTGGCGGTGCATTGCAGTTG
CGTCAATTTGGACACACTGCACCGAT
UFO09059.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:52:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5003-RA | 2491 | CG5003-RA | 88..1204 | 8..1126 | 5300 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:52:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27916148..27916429 | 289..8 | 1410 | 100 | Minus |
| 3R | 32079331 | 3R | 27915792..27916062 | 560..290 | 1355 | 100 | Minus |
| 3R | 32079331 | 3R | 27915109..27915344 | 1079..844 | 1025 | 97.5 | Minus |
| 3R | 32079331 | 3R | 27915396..27915559 | 845..682 | 820 | 100 | Minus |
| 3R | 32079331 | 3R | 27915610..27915733 | 684..561 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:52:11 has no hits.
UFO09059.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:06 Download gff for
UFO09059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5003-RA | 90..1215 | 1..1126 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:19 Download gff for
UFO09059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5003-RA | 90..1215 | 1..1126 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:10 Download gff for
UFO09059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5003-RA | 79..1204 | 1..1126 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:10 Download gff for
UFO09059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27916148..27916433 | 1..289 | 98 | | Minus |
| 3R | 27915072..27915342 | 846..1119 | 94 | <- | Minus |
| 3R | 27915396..27915557 | 684..845 | 100 | <- | Minus |
| 3R | 27915611..27915733 | 561..683 | 100 | <- | Minus |
| 3R | 27915792..27916062 | 290..560 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:19 Download gff for
UFO09059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23740794..23741064 | 846..1119 | 94 | <- | Minus |
| arm_3R | 23741118..23741279 | 684..845 | 100 | <- | Minus |
| arm_3R | 23741333..23741455 | 561..683 | 100 | <- | Minus |
| arm_3R | 23741514..23741784 | 290..560 | 100 | <- | Minus |
| arm_3R | 23741870..23742155 | 1..289 | 98 | | Minus |
