UFO09060.5prime Sequence
1111 bp (1043 high quality bases) assembled on 2011-08-10
> UFO09060.5prime
CAGTCGACATGGCAGCCAACAACGGTAACAAATTCTCAATGGAGCACGAT
TCCGAGGGTTGTGATGAGGTGGACTTTATAGTGGCCACGCACAACAATAA
CAACGATTACGAGGATTTGGGCAGCGTGAGTCAGGCGGTGATCAACACCA
AAGTAGCTGCAGCAGCAGCAACCGCAGCAGCAGCAACACCAAACAACGAA
CCAAACAGCAATACATTGAAAAAAGCCAAGGAGCGTCGCACCCTCTTCCA
TTTCGGAAGCAATAAGAAGCTGAGTCAGAGCAAGTCACAGGAGAGCCAGG
AGGCGGGCAGCAAGGATGCTACGCCGGCGACAACTGCTGCTCCATTGCCG
CCGGTGCCAATCGGTACGCCACCGCGACAGCACAAGTTCGTGAAGAGCAA
CAGCTTGGCCAGATTGCTGGGCAACACCTACAATGCCAAGAAGTTTGAGA
AGCAGGAGCAAAAGCGTCTGGCCTCCGGATCCGAGGGCGGCAAATTCAAC
ACCTACAGTGGAAGGCGTGGCCGTGCGGGTCCCTATTTGGAGCGATTCAA
GCGGGTGTCCAAGGAGGACGGCGATGTGGCTGGCGAGGATGACACGGTGA
GGGTCACGAACGTCATAACCCTGACGACGGACTCGCGGGACTTGCTCTAC
GGCAGCCGGCAGGAGCATGTGGGTCGCACTGGGGGCTATGACCAGAACGA
TCAGCTCACCTCGAAGGCGTATCGCACGCTCACCCGCAGCTTGGGCAAAC
TCTGGAGGCGCACACACAGCGTGGACATTAGCACACCCGATCCGGAGTTC
AAGGTCTCGTACCTGGGCAACGTCCTGACCGGTTGGGCCAAGGCAGGTGA
GGGTTGTGTGGAGAACAGCTGAATACGCTGTGGCGGAACTACACCCAGCA
CTCCAAGCCCGGACGTGATCATGCGCCTGAAGTGTGCGCCTCCGGCTTGA
CGCCACACCCGGCAGCACGGACTCACGGAGTACTGGGTCCATAGGATCAC
TACTGTTGCGCACGAAGAACTATCCGCGGTCCTTCTGCTGGATCTACGCC
CGAGTCAAGAAGCTGAAGCCGGCCTCCGCTGCATGCGGTGCTCCTGGCAC
AAGGAAAAATG
UFO09060.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:52:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8312-RA | 4099 | CG8312-RA | 1004..2098 | 9..1093 | 5060 | 98.2 | Plus |
| CG8312-RD | 3414 | CG8312-RD | 322..1413 | 9..1093 | 5005 | 97.9 | Plus |
| CG8312-RC | 3476 | CG8312-RC | 384..1475 | 9..1093 | 5005 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:52:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9621583..9622417 | 9..843 | 4175 | 100 | Plus |
| 3R | 32079331 | 3R | 9622469..9622678 | 843..1047 | 650 | 93.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:52:14 has no hits.
UFO09060.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:06 Download gff for
UFO09060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8312-RA | 992..2110 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:21 Download gff for
UFO09060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8312-RA | 994..2112 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:12 Download gff for
UFO09060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8312-RA | 994..2112 | 1..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:12 Download gff for
UFO09060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9622470..9622743 | 844..1108 | 91 | | Plus |
| 3R | 9621573..9622417 | 1..843 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:21 Download gff for
UFO09060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5447295..5448139 | 1..843 | 99 | -> | Plus |
| arm_3R | 5448192..5448465 | 844..1108 | 91 | | Plus |
