UFO09062.5prime Sequence
1137 bp (1024 high quality bases) assembled on 2011-08-10
> UFO09062.5prime
CAGTCGACATGGAACCGCCGTACGCCCCGCTAAGTGAGTCCTGCGCCAAG
GCGCTGGGCGACAAGGTGTACGAGAAACGTAAGCTGGCCTCGCAGGAGAT
CGAGAAAATGGTCACGGAATTCAACAACAAAAACAACTCGGCCCAGATCC
GCAAGCTGATCGAGGTTCTGGCCACGGATTATGCCACATCACGGGACGCA
AACCGAAGAAAAGGAGCGCTTATCGGTCTGGCAGCCATGGGTTTAGGGCT
GGGCAAGGATTCCGGCAAGTATGTCCAGGGCATGGTGACGCCCATCATGA
CCTGCCTGTCGGATCCGGATATCCGTGTGCGGTACTTCGCCTGCGAGTCC
CTGTACAACGTGGTGAAGGTGGCCCGCTCTGCGATCATTCCCTTCTTCCC
GGAGCTTTTTGCAGCACTATCGCGTCTCGTCACTGATTCAGATCAAATGG
TGAAGGACGGCAGCGAATTGCTGGATCGTCTTCTAAAGGACATTGTCACG
GAATCGTCGCAAACATTCAATCTGCAGGCGTTCATTCCTTTGCTGAGGGA
GCACATCTATGTAAAGGATGCGTTTGCCCGTCAGTATGTGATCTCATGGA
TATCGATCCTAAATGCCGTACCGGATATAAACATGGTCAACTATTTGACC
GAGATTTTGGACGGATTGTTCGTCATGCTCGAGGACAATACGCTTGAGAT
CCAGCGCATGTGCGAGACCACAATCAGCCAGTTTCTGAAGTCCATAAGGA
ACGACTCGTCATCCGTGCGTATGGAGGATACTATCAATACACTCATAACC
CACGCACAATCGCCCAATGAGCTCATCAAGTCCATTGCGATCACCTGGAT
ACGAGAGTTTGTCCAAATATTTGGACCCAATGTGCTGCCGTATGCTAGTG
GCATATTTACGGCGATATTGCCGTGTCTGGAATACATGTGGAATCGAGAG
GAGCATAAAAGAAGTGGCGCCGTGTCCTGTAACAACTCGATGATGTTGCC
TCGTTTCGACCAAAGGAGCTGAAAACGGAGACAGGTGGCCAAGAATGAAT
TTGCGTTCGATATGAACGTTCTTTCCCGATTCCTCCCGCAATCGAGTGCA
CACAAGAATCGCCAGTAACTAATGGAATCACACCTAT
UFO09062.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5608-RA | 2244 | CG5608-RA | 82..1145 | 9..1075 | 5020 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12464080..12464541 | 947..487 | 2260 | 99.8 | Minus |
| 3R | 32079331 | 3R | 12464606..12464839 | 489..256 | 1155 | 99.6 | Minus |
| 3R | 32079331 | 3R | 12464900..12465051 | 258..107 | 760 | 100 | Minus |
| 3R | 32079331 | 3R | 12465120..12465217 | 106..9 | 490 | 100 | Minus |
| 3R | 32079331 | 3R | 12505092..12505184 | 9..101 | 435 | 97.8 | Plus |
| 3R | 32079331 | 3R | 12508375..12508467 | 9..101 | 435 | 97.8 | Plus |
| 3R | 32079331 | 3R | 12463904..12464009 | 1075..967 | 210 | 90 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:53:00 has no hits.
UFO09062.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:13 Download gff for
UFO09062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5608-RA | 78..1145 | 1..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:43 Download gff for
UFO09062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5608-RA | 78..1145 | 1..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:29 Download gff for
UFO09062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5608-RA | 78..1145 | 1..1075 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:29 Download gff for
UFO09062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12464074..12464539 | 489..952 | 99 | <- | Minus |
| 3R | 12464607..12464837 | 258..488 | 99 | <- | Minus |
| 3R | 12464901..12465051 | 107..257 | 100 | <- | Minus |
| 3R | 12465120..12465221 | 1..106 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:43 Download gff for
UFO09062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8289796..8290261 | 489..952 | 99 | <- | Minus |
| arm_3R | 8290329..8290559 | 258..488 | 99 | <- | Minus |
| arm_3R | 8290623..8290773 | 107..257 | 100 | <- | Minus |
| arm_3R | 8290842..8290943 | 1..106 | 96 | | Minus |
