UFO09063.5prime Sequence
1117 bp (1021 high quality bases) assembled on 2011-08-10
> UFO09063.5prime
CAGTCGACATGGAAACTAATGTGAATCCCCTGGCCGTAATCCTGGTTTAC
TTCGATAGCAAGGGGGATCGGTTACTGTACAGGTATCCGTACCAGACTCT
CGGCCAAACGGAGGTGGCCAACGACGAGCAGCGGAAGTCCAGAAAGCGCA
ATCCCTATGCCGTGGCCAATACGGACGATCTGCTGCAGACACCCACCCAC
TTGGGTGCTGCCAAGAGCCAAGGACAACTGCAGGGATTCGCAGATGAGGT
CCTGTCCGCTCTGTTTGCTGTTAAACCACAGCTATGCAACCAAAAGTTTG
AACTCAAACTGAACGACGTACGCTTTGTCAGTCATCCCACTCTGATACCG
CAAAAGGAGCAGAGAAGTGGTCCAATGGCCAAGCAACAGATGCTCATCAA
CATTGTTTTTGCGCTGCATGCACAGGCCAGCTACTCGATTGTTAAGTGCT
ACCACGAACTGAGCAAGCGCCTTGGACTGGCGCTGAAGTTCGAGGAGCAG
CGCAGTGGCTATCTCACCGAGCAGACGGCTCAAATGGCTCGCACACACGA
CGAGCAGCAGCAACAGCCGCTGGAACGCACACTGGAGCTGATTGCAGAGC
GCTGCAGCTTGGCACAGGCCTTGCGCTCCATCTTCCATGATCTATGCACC
ACTGGACTGCTGAGTACCTCGCTGAATCACAACCTAACGTTGTGCTTCTG
TCTGCCCGCTAAGGCACACCAGCTCCATAAGAAGGGCAGCATGGTGGATC
CAGAGACCATAGATCGGTGCCTTCGTGCACTGAAGCCCTATCATGGCATG
TTGCTGCTGGTCGACTTTGCCGAATTGTTGGACTGCGTTCCACCGACTGG
GGCACGCATGCTATGGCAGCTAGTCGACGTCTACGACCCACTGATCAGTC
TGCAGAGCATGTCCTCCAATGCAGACTTGAGTATCGAGCATGTTTATAGC
TCGTCTCGCATTTGTCTACTGGGCTAAGCACTATTATTTATCCACTCTGC
GAGACAAATGTCTATGTGATCGCGCGATGCACAATTGCACAACCAAGTTC
CCACCTGTGAAAAGTTCCTCGCCGGTTTGCGTATGGTCCCTGTTCCGAGG
TGAATCTCGATTCATGC
UFO09063.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:53:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8783-RC | 2226 | CG8783-RC | 38..1140 | 8..1103 | 5085 | 98.1 | Plus |
| CG8783-RA | 2380 | CG8783-RA | 192..1294 | 8..1103 | 5085 | 98.1 | Plus |
| CG8783-RB | 2297 | CG8783-RB | 109..1211 | 8..1103 | 5085 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14000529..14001436 | 1041..140 | 4280 | 99.1 | Minus |
| 3L | 28110227 | 3L | 14001493..14001627 | 142..8 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:53:06 has no hits.
UFO09063.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:17:13 Download gff for
UFO09063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8783-RA | 184..1257 | 1..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:46 Download gff for
UFO09063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8783-RB | 101..1174 | 1..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:30 Download gff for
UFO09063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8783-RB | 101..1174 | 1..1067 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:30 Download gff for
UFO09063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14000536..14001433 | 143..1033 | 99 | <- | Minus |
| 3L | 14001493..14001631 | 1..142 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:46 Download gff for
UFO09063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13993636..13994533 | 143..1033 | 99 | <- | Minus |
| arm_3L | 13994593..13994731 | 1..142 | 97 | | Minus |
