UFO09066.5prime Sequence
1115 bp (1028 high quality bases) assembled on 2011-08-10
> UFO09066.5prime
CAGTCGACATGGACGTGGAGGATTCCGTGGCGAGCGGAGCGGCATCCGCC
TGCAAGCGCCAAAAGCGAAACACAGATTCCCAGAACGATGGCGAGCCTGA
AGACGCGGCGCAGATTGGTGAGGAGAACACTGTCGCCGAAAGCCAGCCTT
TAATTAACTTCGACACAATTGTCACTCACAACAATAACGGAGAGAGCGAT
ATGGAGGGCAAGGAAAACCAGCTCCAGGATGAGAGCGAGCAGTCCGAGGA
GCATCTTGCTAATAAAGTTGGACCTGAGGAGCTGCCGGAAATAGAACAGG
CAGGCTCCTCCAATTTAGCGCATCAATTATCCCCGGAAGCAGCCTCCACC
GTGCTGGCTTCTGATGAGCCAGATGCTTCCACCGGTGTCATCGAGCCTAG
CGACAGCGAAGACTATCCACCTACTTCACCGACGCCAATTGAAGCTTCCG
AAGCGGTCAGTTCACCCCGCTTCAATCCACGCAACATACCACCCACGCGC
TCCTATCGCCGTATCAGCATAGAGCTAGTGGGCTCCTACTCGGACACAAG
CGATTCAGAAGAACATGAGCTGGAGGAGGGGACCGAGCACGCAGAAGAGT
ACAGCGATGATGCGCCTGAACCGCATATAGCCGAGTCCGCTGACGACAGT
TCCTCCAACGACGACATGGGACCCTATTCTCTTTCCAGTGAAGATGAAAC
AACCACAGAGGACGAGGTGGAGTTTAACGAGGACATCAACCCCGCTGACC
GCGAGAAAGTAGACTACGCCGTTAATCAGGTGATGTGCAAGTGCAAGCCC
AAATACACTTGGAAACTACGATCAGGAGCTGTTGCAAAGGGAGCACAACA
TAATCAACCGGATTGACTGGCGTGCGGCCACACTTCGGCCTCTAGCTTCG
GCCAGGCTACTACGGTTCCCGCCAAGTTGTGGAACAAATGACGCTGCTCA
GTTCGCTAAACGTCCACCACGGCTGCGTCACTCCCTGAACTCAATCGGGC
AGGCGACTTGATTTGCTCAGGCTCGATGATCCTCACCATCGTCGTCTGGA
TGGGCGAAAGAAAAGCAGCTGCACCGTTCGTCGCCCAACATGAACCTATT
CCGACCAGTATGACC
UFO09066.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:46:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8001-RD | 2525 | CG8001-RD | 122..1226 | 9..1102 | 5150 | 98.5 | Plus |
| CG8001-RB | 2672 | CG8001-RB | 269..1373 | 9..1102 | 5150 | 98.5 | Plus |
| CG8001-RC | 2540 | CG8001-RC | 122..1241 | 9..1102 | 4990 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:46:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1756611..1757204 | 118..711 | 2970 | 100 | Plus |
| 3L | 28110227 | 3L | 1757320..1757692 | 709..1076 | 1430 | 97.1 | Plus |
| 3L | 28110227 | 3L | 1756427..1756536 | 9..118 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:46:54 has no hits.
UFO09066.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:20 Download gff for
UFO09066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8001-RB | 261..1348 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:42:19 Download gff for
UFO09066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8001-RB | 261..1348 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:04 Download gff for
UFO09066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8001-RB | 261..1348 | 1..1081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:04 Download gff for
UFO09066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1756419..1756536 | 1..118 | 96 | -> | Plus |
| 3L | 1756612..1757203 | 119..710 | 100 | -> | Plus |
| 3L | 1757322..1757699 | 711..1081 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:42:19 Download gff for
UFO09066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1756419..1756536 | 1..118 | 96 | -> | Plus |
| arm_3L | 1756612..1757203 | 119..710 | 100 | -> | Plus |
| arm_3L | 1757322..1757699 | 711..1081 | 96 | | Plus |
