UFO09067.5prime Sequence
1122 bp (1031 high quality bases) assembled on 2011-08-10
> UFO09067.5prime
CAGTCGACATGGAACAGCAGCAATCAAAAAATAATGCTCACGTCTCAAAG
TTGTTCATTTGTACGGCTGTTGATTGCAAAGATGATATTGAGGAGAAATT
CGAGCGTTCGTTTGTCACTCTGCAGATGCAAATTTCTGGCCTTAGTGACA
AAGAGATGCATGATATGTTGTCACAAGCTGTGTGTAAAGAAAAACAGCAT
GAAGAAATATCAATCGGCTTTCTCTACATAATGCTTACCGACCCTTCTAT
GGCTTCCAAAACATATCGGGACGTTACTCTCGTATCTAGAGACGGAATGA
ATGGCATTGTCACAAATCTCACGTTTCTGGTCGCTGAGAAATATACAAAG
CTCACGGAGGTAGCGAGAAGGCAATTAATTTGGTTGTTACGGGAATTCGT
AAAGCACCAGGTTCTAAGTGTTGAAAATGTTATATGGAACTGTTTGCGTC
AGGCTGGCGGAGGAGATGTTTCCTCCAGAAACCTTTTTCTTATCGAGAGC
CTTTTGGACATATTCATCGAATTTAGAACGTGGTTGGAAACCAACCCATT
TCTCGTTCAGTCTACAGTTTACAGCTTCGTACGCCTAATAGAAGATCACG
CTAACCCTGCTCTCTTGTCGCTTCGGCAGAAAGAAGTGAAGTTTACGATA
TCATTGATCCGAGAAAGGTTCCATGATATTATACCTCTAGGAAGAGATTT
TGTACGCCTCCTACAAAACGTAGCTCGAATTCCTGAGTTTGAACAACTGT
GGCGGGATATTCTTTTCAATCCTAAAATGTTGCATCAACTTTTAACGGAA
TTTGGCAACTACTGCATATACGGACAAGTCGAAAGTTTCTGCAATGCCGT
CTGCTGCCTGAGATGGAACGAAAAATAAGCTTCTTAGCATCTTCTGTTAG
TTTGGAAATCAGAAGAGATACCAAGATTGGTTTCAGGACAATACTTTGCT
ACACCTGAGTCTCATAGCTTGCGATCTGATCTAATTCGATTTATCATAAA
TGTCATCCATCCCACAAACGATATGTTGTGCTCCTGATATTATACCGCGA
TGGGCATCATAGGTTGGCTCATCTCGTTCTGACAATTCATCGCTCTGGCT
TATTGCAAGTTGTTCCATTGGT
UFO09067.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:47:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS3-RA | 3382 | CG17665-RA | 88..1163 | 9..1081 | 5230 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:46:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4242089..4242701 | 706..94 | 3065 | 100 | Minus |
| 2R | 25286936 | 2R | 4238779..4239157 | 1081..706 | 1620 | 98.2 | Minus |
| 2R | 25286936 | 2R | 4242761..4242847 | 95..9 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:46:58 has no hits.
UFO09067.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:21 Download gff for
UFO09067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17665-RA | 93..1184 | 9..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:42:51 Download gff for
UFO09067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS3-RA | 88..1179 | 9..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:06 Download gff for
UFO09067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS3-RA | 88..1179 | 9..1094 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:06 Download gff for
UFO09067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4238763..4239156 | 707..1094 | 97 | <- | Minus |
| 2R | 4242089..4242699 | 96..706 | 100 | <- | Minus |
| 2R | 4242761..4242847 | 9..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:42:51 Download gff for
UFO09067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 126268..126661 | 707..1094 | 97 | <- | Minus |
| arm_2R | 129594..130204 | 96..706 | 100 | <- | Minus |
| arm_2R | 130266..130352 | 9..95 | 100 | | Minus |
