UFO09068.5prime Sequence
1134 bp (1029 high quality bases) assembled on 2011-08-10
> UFO09068.5prime
CAGTCGACATGAAGCGCAGCCGGTGGAGCCACAGTGGCTCCTCCACGGCT
CGACTCCTGCTGATCGGAGTATTGTTCGCCAGCTGTTCCACCGCCATCCT
GGGTGCCCAGCGTCCCCCCATCAACTCCGCCGGAGGTCACGAACTGCGCG
GAACCACCTTCATGCCGGCCCTGGAGTGCTACGATCCATACGGCAGGCCA
CAGAAATGTCTGCCAGAATTTATCAATGCTGCCTATCAACTGCAAATTGA
GTCAACTAATACCTGTGGTGAGCAGAATGACAACCACTTCTGCATACAAA
CCATGAACCAAAATCACAAAAACTGCGAATTTTGCAAATACAATGATCAT
AATCCATCCTTCTTGACGGATTTGCATGATCCGCAAAGTCCAACGTGGTG
GCAATCGGAGACCATGTTCGAGGGCATTCAGCACCCGAACTATGTGAATC
TGACTTTGCACCTTGGAAAATCCTATGACATCACCTACGTGCGCATTCTC
TTCCGCTCACCAAGACCCGAATCCTTTACGATTTACAAGAGGACCTCGGA
GAGTGGACCCTGGATTCCCTACCAGTTCTACAGTGCCACCTGTCGCGACA
CCTACTCCCTGCCAGATTCGCGAGCCATTCGCAAGGGTGAGGGCGAGGCC
CATGCTCTGTGTACCAGCGAATACAGTGATATCTCGCCGTTGAGGGACGG
TGAGATTGCCTTCTCCACGCTGGAGGGTCGTCCCAGTGGCATCAATTTTG
AGCGCAGCGGAGAACTGCAGGAGTGGGTCACGGCCACGGATATCCGTATC
ACGCTGGACCGACTGAACACCTTCGGTGACGAACTCTTCGGTGATTCCCA
GGTGCTCAAGTCGTACTTCTATGCCATCAGTGACATTGCCGTGGGTGCGC
GTTGCAAGTGCAATGGACATGCCAGCAAGTGTGTACCGAGCACGGGAATG
CATGGCGAGAGGACTCTGGTCTGCGAAGTGCCGGCACAATACGGATGGAA
CCCGATTGCGATCGCTGTCTGCCACTTCTACACGACCTCAGTGGGAAAAA
ATCCACCCTCAACGAGTCCACGGAGTGCAAAGCTTGGCCACTGCAATGAA
TGGCGGACAAATGCTTTCTTCTCAAGCGAATTGT
UFO09068.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LanB2-RB | 5857 | CG3322-RB | 347..1453 | 8..1116 | 5180 | 98.4 | Plus |
| LanB2-RA | 5762 | CG3322-RA | 252..1358 | 8..1116 | 5180 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9618169..9618759 | 465..1057 | 2715 | 98 | Plus |
| 3L | 28110227 | 3L | 9617246..9617441 | 8..203 | 980 | 100 | Plus |
| 3L | 28110227 | 3L | 9617777..9617912 | 202..337 | 680 | 100 | Plus |
| 3L | 28110227 | 3L | 9617976..9618104 | 338..466 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:47:03 has no hits.
UFO09068.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:21 Download gff for
UFO09068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LanB2-RA | 244..1326 | 1..1090 | 98 | <- | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:43:20 Download gff for
UFO09068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LanB2-RA | 249..1331 | 1..1090 | 98 | <- | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:07 Download gff for
UFO09068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LanB2-RA | 249..1331 | 1..1090 | 98 | <- | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:07 Download gff for
UFO09068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9617243..9617441 | 1..203 | 98 | -> | Plus |
| 3L | 9617779..9617912 | 204..337 | 100 | -> | Plus |
| 3L | 9617976..9618103 | 338..465 | 100 | -> | Plus |
| 3L | 9618170..9618743 | 466..1041 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:43:20 Download gff for
UFO09068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9610879..9611012 | 204..337 | 100 | -> | Plus |
| arm_3L | 9611076..9611203 | 338..465 | 100 | -> | Plus |
| arm_3L | 9610343..9610541 | 1..203 | 98 | -> | Plus |
| arm_3L | 9611270..9611843 | 466..1041 | 99 | -> | Plus |
