UFO09071.5prime Sequence
1136 bp (996 high quality bases) assembled on 2011-08-10
> UFO09071.5prime
CAGTCGACATGGCCGAAGTGGAGAAACCAACGGCGGCCACGCCCCCGACC
GACATCCCCCAGGCCACGGCTGCACCTGCCAGCGAGGCGCCAGTGGCTGT
AACGCCCACAGCGGATACCACCGTGGACGTCGAGCCGGGCACCTCGCCCA
CCCAGGAGCCCAACTCCAATTCGCATCCGCACGACTCCGAGTACGACACG
GCCAGTGATCTGGAGGGCGGAGAGGACTATGACGACGAGGAGAGTGCCAG
CGGCAGCGCCAGTGGCAGTGGGAGCGAGGAGGAATCTGAGACGGACGACG
AGGACGATGAGGTGGGCAGCGAAACGGACGATGGCGAAGGGGAGCAGGCG
ATGGACCGCTCCGTCGCAGACAGTGAGGCCCAGAAGAAGGTGGACGAGGA
TCGCAGCAATCCGCAGTACATCCCAAAGCGGGGCACTTTCTACGAGCACG
ACGATCGGACGGCGGAGACCGAGGGAGAAATCCTGATCGAACCCGAAAAC
GGTGCTGGCCAGGCGGCGGCGGAGCCAAATGGCGAACTCAATGGACTTGC
GGCCGCCGGTGCCACGCCGACTGGCCAAACGCCACAGATCTCACAGGCAT
CGAAGACCATGCGAAAATGGCAACCAGCTTCAGGCGGTGATCGCTGGTCT
CACGATCGATTCGAGGCCACGGAGCAGGCTCCCAAATCCCGTGCAGAGTT
GCTGCAAACATACGGCTACGACATTAGAAACGAGGACGCACCACCCAGAG
CCAGACGTCGCCGGCGATATACGCGTGGGCCTAGTAAATACTCAAGAAAC
TGGGAGGACGAGCAGCCTACCTCAAAGCCAGCAATATGAGCGCAAGCCGC
CGCGGCCACAGGACTTCCCGGCGCTCAACGAAAGAAAGCCACGTGGTCCA
CGAACATCATCCTCGCGTGAGAAAAGGAAAACCGACGTTCGTCGCTGCTG
AAGCTTGTTCAGAAGAAGCAACAGCCCTTGCCAGTAGCTCCATCCACACA
GAATCCCAGGAGCGTGACGTGAGAGGGAAAGGGAGCGGGACGCGAATCGA
AGCCAGGATCGCAACTTCGGCGGATGAACGGCGCCCGGAACGTCGAATGG
CATGATAGAGAACACCTGGACGTACGCTAAAAAGCG
UFO09071.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| btz-RD | 3009 | CG12878-RD | 212..1321 | 9..1104 | 5000 | 97.8 | Plus |
| btz-RC | 2671 | CG12878-RC | 141..1250 | 9..1104 | 5000 | 97.8 | Plus |
| btz-RA | 2742 | CG12878-RA | 212..1321 | 9..1104 | 5000 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:47:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27700648..27701687 | 9..1040 | 4635 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:47:18 has no hits.
UFO09071.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:24 Download gff for
UFO09071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| btz-RA | 307..1421 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:44:49 Download gff for
UFO09071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| btz-RA | 207..1321 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:13 Download gff for
UFO09071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| btz-RA | 207..1321 | 1..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:13 Download gff for
UFO09071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27700643..27701757 | 1..1104 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:44:49 Download gff for
UFO09071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23526365..23527479 | 1..1104 | 97 | | Plus |
