UFO09074.5prime Sequence
1129 bp (1016 high quality bases) assembled on 2011-08-10
> UFO09074.5prime
CAGTCGACATGCGGGTAGTGGCCATGGTCAGTGGCGGCAAGGACAGCTGC
TACAACATGATGCAGTGCGTCGCCGAGGGCCACGAAATCGTCGCCCTGGC
CAATCTGCATCCCAAGGACAGAGACGAACTGGACAGCTTCATGTACCAGA
CGGTCGGCCACATGGGCATCGAGATACTGGCCAGCGCCATGGGATTGCCA
CTATACCGGCGCGAAACCAAGGGCAAGAGCACCCAGACCGGCAAGCAATA
CGTGCCCACCGATGACGACGAGGTCGAGGATCTATACAGTCTGCTGGAGA
CATGCAAGCACGAACTTCAGGTGGATGCGGTGGCCGTGGGCGCCATCCTC
TCGGATTACCAACGCGTGCGTGTGGAGAACGTGTGCAGCCGCCTGAACCT
GATATCCCTGGCCTATCTGTGGAGGAGAGATCAGACTGAATTGCTGCAGG
AGATGATCGACTGCCAGGTGCACGCCATCATCATAAAGGTGGCTGCCCTG
GGCCTCGTGCCGGATCGACACCTGGGCAAATCGCTGCGCGAGATGCAGCC
GCACCTGCTGAAGATGCGCGACAAGTACGGACTGAATGTGTGCGGCGAGG
GTGGCGAGTATGAGACATTCACCCTGGACTGCCCGCTCTTTCGGCAGCGC
ATCGTTGTCGAGGACATCCAGACGATAATCAGCAGTGCCGATCCCATCTG
CCCGGTGGGCTACATCAATTTCACCAAACTGACGCTGCAGCCAAAGGAGG
CGGCGGGCGCGGCCAGCAGCGGCGGCAACGAGGTGGTGTTCGTGAAGCGT
TCACTCGACTATATTAGCGATCTGAACGAATCGACGTACAGCGACCTCAG
TGATCCGGATTTCAGTGAAACAGAACTGGAACTAATCGAAAAGGAGACCA
GGCTGCGCGAATCGCTTAGCCAAAGTGAGCTGATATCGCGCAGTAACTCC
TTTGGTCGGCATCTGGCCGCCACCGCCTCCTCGCGATACCCATTGTTCAC
GAGAGCGCCAGCGTCGACGAGCCCACAGCGGCGGCGGCGCCGGATACTTG
GGGCGGGATGGAGGACACAATCTGTTCCACTCTAGCTGGTGCGTCATGCT
GCTGAAAACTCACCGCCGACTGCTTGATC
UFO09074.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:47:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1578-RB | 4512 | CG1578-RB | 382..1501 | 9..1127 | 5210 | 98.2 | Plus |
| CG1578-RC | 3741 | CG1578-RC | 460..1579 | 9..1127 | 5210 | 98.2 | Plus |
| CG1578-RA | 3667 | CG1578-RA | 386..1505 | 9..1127 | 5210 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:47:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11812049..11812605 | 1042..487 | 2645 | 98.7 | Minus |
| X | 23542271 | X | 11814697..11814883 | 308..122 | 935 | 100 | Minus |
| X | 23542271 | X | 11813286..11813469 | 490..307 | 920 | 100 | Minus |
| X | 23542271 | X | 11815170..11815284 | 123..9 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:47:27 has no hits.
UFO09074.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:25 Download gff for
UFO09074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1578-RA | 360..1465 | 1..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:45:47 Download gff for
UFO09074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1578-RA | 379..1484 | 1..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:16 Download gff for
UFO09074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1578-RA | 379..1484 | 1..1105 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:16 Download gff for
UFO09074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11811985..11812603 | 489..1105 | 97 | <- | Minus |
| X | 11813288..11813467 | 309..488 | 100 | <- | Minus |
| X | 11814697..11814881 | 124..308 | 100 | <- | Minus |
| X | 11815170..11815291 | 1..123 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:45:47 Download gff for
UFO09074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11706018..11706636 | 489..1105 | 97 | <- | Minus |
| arm_X | 11707321..11707500 | 309..488 | 100 | <- | Minus |
| arm_X | 11708730..11708914 | 124..308 | 100 | <- | Minus |
| arm_X | 11709203..11709324 | 1..123 | 96 | | Minus |
