UFO09075.5prime Sequence
1152 bp (1010 high quality bases) assembled on 2011-08-10
> UFO09075.5prime
CAGTCGACATGACAAACTGCCAAAGTTCAGTGTTCATAGTCGTAGGCACC
CTGTTTTCCATCATGGCAGCGGCTCAATCGGCACCCGTTTCCACCACCAC
ACAGGCAGAGATCTACCTGTCCCAGTTCGGCTATCTACCCGCCTCTGCCC
GCAATCCCGCCAGCAGTGGGCTACACGACCAGCGGACCTGGGTGAGTGCC
ATCGAGGAGTTCCAAAGCTTCGCGGGACTGAACATCACCGGCGAGCTGGA
TGCGGAGACAATGAAGCTGATGTCCCTGCCCCGCTGCGGAGTTCGGGATC
GCGTCGGCACCGGTGACAGCCGCTCCAAGCGGTACGCCCTGCAGGGCAGT
CGCTGGCGTGTGAAGAACCTCACCTACAAGATCTCCAAGTACCCCAAGCG
GCTGAAGCGAGTCGATGTCGACGCGGAGATCGGTCGCGCATTTGCCGTGT
GGTCCGAGGACACCGACCTGACCTTCACCAGGAAGACCTCCGGCCCCGTG
CACATCGAGATCAAGTTCGTGGAGAGCGAGCATGGAGACGGCGATGCCTT
TGACGGTCAAGGCGGCACCCTGGCGCATGCCTTCTTCCCTGTCTTTGGCG
GAGATGCCCACTTTGACGACGCGGAACTGTGGACCATTGGCTCTCCTCGA
GGCACCAATCTGTTCCAGGTGGCCGCTCACGAGTTCGGTCACTCCTTGGG
ACTCTCCCACTCAGATCAGAGCTCCGCTCTGATGGCGCCCTTCTATCGCG
GCTTTGAACCCGTCTTCAAGTTGGACGAGGACGACAAGGCGGCCATCCAG
TCACTGTATGGGCGCAAAACAAACCAGCTGAGGCCTACCAACGTGTACCC
GGCCACCACCCAGCGGCCATACTCTCCTCCAAAGGTGCCACTAGACGACT
CCATCTGCAAGGACTCCAAGGTAGACACACTCTTCAACTCGCGCAGCGAG
ACCTACGCTTCAAGGCGACAAATACTACAGCTGACACGGACTCCGTGGAG
GAGGCTACCACAGCTCATCTCAAGGCTGTGGGATTGCCGGCAACATTCGA
TGCGGCGTTCACCCTACAAGAAACGGCAGACGTTACTTCTTCAGGGTACT
CAGTACTGGCCTACAGGTCGTCTCGTAATTGGAACGCCTTACCACCTATG
GA
UFO09075.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:47:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mmp1-RL | 3781 | CG4859-RL | 502..1615 | 9..1110 | 5080 | 98 | Plus |
| Mmp1-RK | 3325 | CG4859-RK | 511..1624 | 9..1110 | 5080 | 98 | Plus |
| Mmp1-RJ | 3790 | CG4859-RJ | 511..1624 | 9..1110 | 5080 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:47:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24675518..24676125 | 1110..515 | 2175 | 95.4 | Minus |
| 2R | 25286936 | 2R | 24676194..24676601 | 516..109 | 2040 | 100 | Minus |
| 2R | 25286936 | 2R | 24682214..24682315 | 110..9 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:47:31 has no hits.
UFO09075.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:26 Download gff for
UFO09075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mmp1-RE | 504..1639 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:46:16 Download gff for
UFO09075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mmp1-RJ | 504..1639 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:19 Download gff for
UFO09075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mmp1-RJ | 504..1639 | 1..1122 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:19 Download gff for
UFO09075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24675509..24676125 | 515..1116 | 95 | <- | Minus |
| 2R | 24676196..24676599 | 111..514 | 100 | <- | Minus |
| 2R | 24682214..24682322 | 1..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:46:16 Download gff for
UFO09075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20563032..20563648 | 515..1116 | 95 | <- | Minus |
| arm_2R | 20563719..20564122 | 111..514 | 100 | <- | Minus |
| arm_2R | 20569737..20569845 | 1..110 | 96 | | Minus |
