UFO09076.5prime Sequence
1153 bp (1059 high quality bases) assembled on 2011-08-10
> UFO09076.5prime
CAGTCGACATGGCAGACTCCGGCAAACACGCGAGTGGTGGTCACAATGGA
GCGAACAGCGAACGCAGAAACGACCAGAACGGACGCAACGGACGCAATGG
ACACAACGGACACAGTCAAGGACGACAGCTGCAGTTCCTGGACAATCCGC
CCCCCAGCCAAGCCACCTTCAATGTGCGCAGTCTGTGGCCAAGCATAAAG
TCTGGTGTTCGCCGCTTGAGGAGCCAGTTGCTCCGGCGGACAGCCACCAC
GGGTCCAGCGATGGCTCCGTCCGGTGGAGCGGACTTACCTCCCTCGGACA
ATGATCGGGCTGCGCCATCCAGAAGCGGTGACGGGAACACGGAAACAGAC
GGCAGTAATCCACATCGAAGGCTGGACGAATCGTCCGTGATGGGCAGTAT
GCAGTCAGTGAAAAATTATATTAAAAGAACACGCCCAGGCCGGAAAAAAA
GAAAAGATGACGAGGACTTCACCTCGTCCGCTGGGTACGATGCAGATGAT
GGGGAGAGGCGTATCATAAACCTAAATGGGCCACAGCCCACTAAGTACGG
TAATAATCGCATAACGACGGCAAAATATAGTTTCATCAGCTTTTTGCCCG
CGTTCCTGTTCGAGCAATTCCGGCGTTACTCCAACTGCTTTTTCCTGCTA
ATTGCCATACTGCAACAAATCCCGGAGGTGTCGCCGACGGGTCGTTACAC
CACGCTAGTGCCACTGATGTTCATCCTGTCGGTGAGCGCCATTAAGGAGA
TAATCGAGGACATTAAACGACATCGGGCGGATAATGAGATCAATCACCGA
TCGATAGAGCGCCTGGATAGTGGCTCGTGGTGCACAGTTCGCTGGTCGGA
GTTGACGGTGGGCGATATCATCAAAGTGGGAATCAATACCTTCTTCCCCG
CCGATCTGATTCTGCTGTCGTCCAGTGAACCGCAGGCCATGTGCTTCATA
GAGACGGCCAATTTGGGATGGTGAGACCACCTGAGATTCGACAGGCCCTC
CCAGCCACCGCTGACTGCTGGAGACGAAGATCTTGCAACGATTGGGAGGG
CAGGATCGGAGTGCGAGCTGCCCACCGGCATTTTATCAGGTTACGGGAGT
GCCTCAGGAAACTGAGCCACCGCCTGCCTTTGGCAATGAATCACAGGGCT
CCC
UFO09076.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:47:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42321-RP | 5080 | CG42321-RP | 420..1555 | 9..1139 | 5200 | 97.8 | Plus |
| CG42321-RO | 4787 | CG42321-RO | 420..1555 | 9..1139 | 5200 | 97.8 | Plus |
| CG42321-RN | 4553 | CG42321-RN | 186..1321 | 9..1139 | 5200 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:47:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13425513..13425960 | 456..9 | 2240 | 100 | Minus |
| 2R | 25286936 | 2R | 13422320..13422505 | 764..579 | 915 | 99.5 | Minus |
| 2R | 25286936 | 2R | 13422099..13422259 | 925..765 | 805 | 100 | Minus |
| 2R | 25286936 | 2R | 13422602..13422727 | 580..455 | 630 | 100 | Minus |
| 2R | 25286936 | 2R | 13421888..13422039 | 1074..923 | 415 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:47:36 has no hits.
UFO09076.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:27 Download gff for
UFO09076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RO | 419..1505 | 9..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:46:46 Download gff for
UFO09076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RN | 186..1272 | 9..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:20 Download gff for
UFO09076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RN | 186..1272 | 9..1093 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:20 Download gff for
UFO09076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13421872..13422036 | 926..1090 | 92 | <- | Minus |
| 2R | 13422099..13422259 | 765..925 | 100 | <- | Minus |
| 2R | 13422320..13422503 | 581..764 | 99 | <- | Minus |
| 2R | 13422602..13422725 | 457..580 | 100 | <- | Minus |
| 2R | 13425513..13425960 | 9..456 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:46:46 Download gff for
UFO09076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9309377..9309541 | 926..1090 | 92 | <- | Minus |
| arm_2R | 9309604..9309764 | 765..925 | 100 | <- | Minus |
| arm_2R | 9309825..9310008 | 581..764 | 99 | <- | Minus |
| arm_2R | 9310107..9310230 | 457..580 | 100 | <- | Minus |
| arm_2R | 9313018..9313465 | 9..456 | 100 | | Minus |
