UFO09080.5prime Sequence
1109 bp (1014 high quality bases) assembled on 2011-08-10
> UFO09080.5prime
CAGTCGACATGGGCGATGAAGGCGGTGGCGGTGGTCATGGCAAGGGAGAC
CTTAAGTCTTTCCTCATGGACTTCATGATGGGCGGCGTTTCAGCTGCCAT
AGCCAAGACGGCAGTGGCTCCTATCGAGCGCGTGAAGCTCATTCTGCAGG
TGCAGGAGGTTTCCAAGCAGATCGCGGCAGATCAGCGCTACAAGGGCATA
GTCGATTGCTTCATTCGCATTCCCAAGGAGCAGGGCTTCTCGTCGTTCTG
GCGCGGCAACTTGGCCAACGTAATCCGATACTTCCCAACTCAAGCCCTTA
ACTTTGCCTTCAAGGATGTGTACAAATCGGTATTCCTCGGGGGCGTGGAC
AAGCACAAGCAGTTCTGGCGCCACTTTGCAGGAAATTTGGCCTCTGGCGG
TGCAGCAGGTGCCACATCTCTGTGCTTCGTTTATCCACTGGACTTTGCCA
GAACCCGTTTGGCCGCCGATGTGGGCAAGGGCGGCAATCGGGAGTTCAAC
GGCCTGATCGATTGTCTAATGAAGGTGATCAAGAGTGACGGACCCATCGG
TCTGTACCGTGGATTCATCGTGTCGGTGCAGGGCATCGTCATCTACCGAG
CAGCATACTTTGGATTCTATGACACTTGCCGCGACTTTCTGCCGAATCCG
AAGAGCACACCGTTCTATGTGAGCTGGGCGATTGCCCAGGTGGTCACAAC
CGTTGCCGGTATTGCCTCCTATCCCTTCGATACTGTGCGTCGCCGCATGA
TGATGCAGTCTGGCCTGAAGAAGTCCGAGATGGTGTACAAGAACACAGCC
CATTGCTGGCTGGTGATTGCCAAGCAGGAGGGCATTGGAGCCTTTTTCAA
GGCGCCCTATCGAACATAATTCGCGGCACGGGCGGTGCTCTGGTTCTCGC
CCTTTACGACGAGATGAGAGTACTTTGCAGCTTTCTAGACCATTCGTTTG
CGCGCGGGCCCAGGTAGTGGTCATAATCATATCATATCATATCATATCAC
ACTAGCTAGAGATCTGTCATGACTAGTGCTTGAATCCACAATAAAAACGC
CGGCGGCACGAACGTTCTGGACAATCAGATGGAATTCGAAGTCATACTGA
ATCTATCAC
UFO09080.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:47:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ant2-RC | 1266 | CG1683-RC | 74..996 | 7..926 | 4510 | 99.5 | Plus |
| Ant2-RB | 1302 | CG1683-RB | 110..1032 | 7..926 | 4510 | 99.5 | Plus |
| Ant2-RA | 1335 | CG1683-RA | 143..1065 | 7..926 | 4510 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10779235..10779696 | 917..457 | 2260 | 99.8 | Minus |
| X | 23542271 | X | 10780195..10780519 | 331..7 | 1610 | 99.7 | Minus |
| X | 23542271 | X | 10779993..10780121 | 457..329 | 630 | 99.2 | Minus |
| X | 23542271 | X | 10781701..10782000 | 852..553 | 465 | 77 | Minus |
| X | 23542271 | X | 10782393..10782606 | 316..103 | 455 | 80.8 | Minus |
| X | 23542271 | X | 10782181..10782301 | 449..329 | 275 | 81.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:47:49 has no hits.
UFO09080.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:28 Download gff for
UFO09080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ant2-RB | 78..1009 | 1..931 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:48:17 Download gff for
UFO09080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ant2-RA | 138..1069 | 1..931 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:25 Download gff for
UFO09080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ant2-RA | 138..1069 | 1..931 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:25 Download gff for
UFO09080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10779235..10779695 | 458..917 | 99 | <- | Minus |
| X | 10779993..10780120 | 330..457 | 99 | <- | Minus |
| X | 10780197..10780522 | 1..329 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:48:17 Download gff for
UFO09080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10673268..10673728 | 458..917 | 99 | <- | Minus |
| arm_X | 10674026..10674153 | 330..457 | 99 | <- | Minus |
| arm_X | 10674230..10674555 | 1..329 | 98 | | Minus |
